Os04g0465900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0465900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.78 | 0.269 | 2.87 | 0.0289 | 0.0247 | 0.174 | -0.54 | -0.662 | 0.129 | 19 | 18.8 | 5584 | -- | -- |
| 32.81 | 0.267 | 2.9 | 0.00348 | 0.0184 | 0.501 | -0.555 | -- | 0.115 | 18.9 | 17.4 | 5537 | -- | -- |
| 33.53 | 0.27 | 2.87 | 0.0421 | 0.0224 | 0.167 | -- | -0.703 | 0.129 | 19.1 | 18.79 | 5640 | -- | -- |
| 33.4 | 0.269 | 2.9 | 0.0654 | 0.0439 | 0.447 | -- | -- | 0.113 | 19.3 | 17.15 | 12818 | -- | -- |
| 33.56 | 0.27 | 2.87 | 0.0444 | -- | 0.17 | -- | -0.703 | 0.129 | -- | 18.8 | 5640 | -- | -- |
| 35.23 | 0.278 | 2.92 | -0.248 | 0.0288 | -- | -0.585 | -- | 0.0308 | 18.9 | -- | -- | -- | -- |
| 36.11 | 0.281 | 2.92 | -0.238 | 0.0278 | -- | -- | -- | 0.0292 | 19.9 | -- | -- | -- | -- |
| 33.36 | 0.269 | 2.89 | 0.124 | -- | 0.502 | -- | -- | 0.14 | -- | 17.32 | 12854 | -- | -- |
| 33.49 | 0.27 | 2.9 | -- | 0.0257 | 0.414 | -- | -- | 0.108 | 19.6 | 16.9 | 12701 | -- | -- |
| 36.15 | 0.281 | 2.92 | -0.238 | -- | -- | -- | -- | 0.0288 | -- | -- | -- | -- | -- |
| 37.6 | 0.287 | 2.91 | -- | 0.0297 | -- | -- | -- | 0.0557 | 19.4 | -- | -- | -- | -- |
| 33.53 | 0.27 | 2.9 | -- | -- | 0.415 | -- | -- | 0.108 | -- | 16.87 | 12701 | -- | -- |
| 37.65 | 0.286 | 2.91 | -- | -- | -- | -- | -- | 0.0552 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.04 | wind | 7.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 3 | 31.15 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 11 | 5 |
| 4 | 31.23 | temperature | 20.0 | 90 | < th | dose independent | rect. | 10 | 6 |
| 5 | 31.24 | wind | 7.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 19 | 31.44 | wind | 9.0 | 30 | > th | dose independent | rect. | 17 | 9 |
| 197 | 31.84 | temperature | 25.0 | 90 | < th | dose independent | rect. | 14 | 4 |
| 256 | 31.97 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 18 | 23 |
| 277 | 32.05 | humidity | 70.0 | 30 | > th | dose independent | rect. | 10 | 8 |
| 285 | 32.11 | temperature | 20.0 | 720 | < th | dose independent | rect. | 10 | 1 |
| 287 | 32.11 | humidity | 90.0 | 720 | > th | dose independent | rect. | 11 | 1 |
| 288 | 32.11 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 10 | 1 |
| 292 | 32.11 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 294 | 32.11 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 295 | 32.11 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 303 | 32.17 | wind | 9.0 | 10 | > th | dose independent | sin | 12 | NA |
| 308 | 32.19 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 5 |
| 311 | 32.20 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 3 |
| 318 | 32.22 | wind | 9.0 | 10 | < th | dose independent | sin | 12 | NA |
| 319 | 32.23 | wind | 7.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 320 | 32.24 | wind | 7.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 323 | 32.25 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 324 | 32.25 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 332 | 32.27 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 23 |
| 348 | 32.29 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 14 |
| 358 | 32.30 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 359 | 32.30 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 362 | 32.31 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 371 | 32.31 | wind | 5.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 373 | 32.31 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 1 | 13 |
| 374 | 32.31 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 16 | 20 |
| 375 | 32.32 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 379 | 32.32 | wind | 5.0 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 382 | 32.32 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 392 | 32.33 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 399 | 32.33 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 404 | 32.33 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 407 | 32.33 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 415 | 32.34 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 427 | 32.34 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 434 | 32.35 | wind | 5.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 442 | 32.35 | wind | 5.0 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 464 | 32.36 | wind | 9.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 466 | 32.36 | wind | 7.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 475 | 32.36 | wind | 5.0 | 14400 | > th | dose independent | rect. | 24 | 17 |
| 486 | 32.36 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 512 | 32.37 | wind | 7.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 513 | 32.37 | wind | 9.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 514 | 32.37 | wind | 5.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 518 | 32.37 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 5 |
| 528 | 32.37 | wind | 5.0 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 542 | 32.37 | wind | 5.0 | 14400 | < th | dose independent | rect. | 24 | 18 |
| 555 | 32.37 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 556 | 32.37 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 16 | 7 |
| 574 | 32.37 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 20 | 21 |
| 660 | 32.39 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 3 |
| 682 | 32.39 | wind | 5.0 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 689 | 32.39 | wind | 5.0 | 14400 | > th | dose independent | rect. | 13 | 20 |
| 707 | 32.39 | wind | 5.0 | 14400 | > th | dose dependent | no | NA | NA |
| 772 | 32.40 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 814 | 32.40 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 816 | 32.40 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 818 | 32.40 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 824 | 32.41 | wind | 5.0 | 14400 | > th | dose independent | no | NA | NA |
| 825 | 32.41 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 897 | 32.41 | wind | 5.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 943 | 32.42 | temperature | 20.0 | 90 | < th | dose independent | rect. | 11 | 11 |
| 986 | 32.42 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 987 | 32.42 | wind | 5.0 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 993 | 32.42 | wind | 5.0 | 14400 | < th | dose independent | rect. | 24 | 23 |