Os04g0465600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bet v I allergen family protein.
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Os04g0465600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Bet v I allergen family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 680.08 | 1.23 | 6.25 | -0.947 | 2.56 | 3.94 | 3.96 | 3.28 | -1.09 | 5.82 | 23.67 | 748 | -- | -- |
| 693.55 | 1.23 | 6.17 | -0.469 | 2.57 | 3.53 | 4.35 | -- | -0.969 | 5.91 | 23.8 | 750 | -- | -- |
| 715.8 | 1.25 | 6.28 | -1.09 | 2.51 | 4.21 | -- | 4.6 | -1.16 | 5.87 | 23.41 | 651 | -- | -- |
| 739.7 | 1.27 | 6.19 | -0.418 | 2.62 | 3.5 | -- | -- | -1 | 5.79 | 23.8 | 803 | -- | -- |
| 855.21 | 1.36 | 6.28 | -0.894 | -- | 5.08 | -- | 4.43 | -0.927 | -- | 31.14 | 389 | -- | -- |
| 859.98 | 1.37 | 6.32 | -1.44 | 2.75 | -- | 4.38 | -- | -1.64 | 6.37 | -- | -- | -- | -- |
| 907.59 | 1.41 | 6.33 | -1.39 | 2.77 | -- | -- | -- | -1.65 | 6.36 | -- | -- | -- | -- |
| 871.88 | 1.38 | 6.19 | -0.173 | -- | 5.15 | -- | -- | -0.77 | -- | 31.98 | 388 | -- | -- |
| 743.85 | 1.27 | 6.18 | -- | 2.64 | 3.67 | -- | -- | -0.948 | 5.78 | 23.8 | 811 | -- | -- |
| 1304.95 | 1.69 | 6.38 | -1.31 | -- | -- | -- | -- | -1.6 | -- | -- | -- | -- | -- |
| 958.23 | 1.45 | 6.29 | -- | 2.75 | -- | -- | -- | -1.5 | 6.38 | -- | -- | -- | -- |
| 872.36 | 1.38 | 6.18 | -- | -- | 5.23 | -- | -- | -0.726 | -- | 31.83 | 385 | -- | -- |
| 1350.46 | 1.72 | 6.35 | -- | -- | -- | -- | -- | -1.45 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 678.09 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 4 | 681.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 36 | 686.27 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 50 | 688.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 51 | 688.12 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 71 | 688.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 92 | 690.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 105 | 690.81 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 111 | 691.09 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 140 | 692.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 143 | 692.69 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 144 | 692.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 168 | 693.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 203 | 694.36 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 243 | 695.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 260 | 695.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 277 | 695.91 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 316 | 696.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 386 | 697.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 475 | 698.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 479 | 698.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 485 | 698.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 539 | 699.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 543 | 699.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 584 | 699.75 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 650 | 700.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 656 | 700.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 696 | 700.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 699 | 700.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 762 | 701.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 811 | 701.64 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 837 | 701.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 917 | 702.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 955 | 702.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 971 | 702.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |