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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0465500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GCN5-related N-acetyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0302) R2 : 0.27
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.806 (0.0717) R2dC : 0.203 R2C : 0.186
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.404 (0.0634) R2dN8 : 0.0838 R2N8 : 0.0671
σ : 0.569
deviance : 147.74
__
_____
C
peak time of C : 12
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.11 0.517 10.3 0.563 0.105 0.786 -1.63 -0.858 -0.381 22.5 1.659 38 -- --
122.15 0.515 10.3 0.541 0.0873 0.795 -1 -- -0.395 21.2 0.9967 46 -- --
123.14 0.517 10.3 0.637 0.117 0.789 -- 0.386 -0.383 22.8 1.653 43 -- --
123.85 0.518 10.3 0.638 0.119 0.793 -- -- -0.376 23.7 1.66 41 -- --
123.17 0.517 10.3 0.656 -- 0.717 -- 0.385 -0.373 -- 1.56 46 -- --
134.8 0.544 10.2 0.635 0.817 -- 0.588 -- -0.333 12 -- -- -- --
136.29 0.547 10.2 0.659 0.815 -- -- -- -0.33 12.1 -- -- -- --
124.01 0.519 10.3 0.647 -- 0.716 -- -- -0.369 -- 1.653 46 -- --
134.01 0.539 10.3 -- 0.153 0.839 -- -- -0.403 23.4 0.8361 39 -- --
178.11 0.624 10.3 0.634 -- -- -- -- -0.342 -- -- -- -- --
147.74 0.569 10.3 -- 0.806 -- -- -- -0.404 12 -- -- -- --
134.14 0.539 10.3 -- -- 0.711 -- -- -0.424 -- 0.8374 36 -- --
188.7 0.641 10.3 -- -- -- -- -- -0.412 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.31 radiation 1.0 1440 < th dose independent rect. 11 1
2 109.31 radiation 1.0 1440 < th dose dependent rect. 11 1
3 110.93 radiation 1.0 1440 < th dose independent rect. 13 2
4 110.93 radiation 1.0 1440 < th dose dependent rect. 13 2
5 111.01 radiation 1.0 1440 < th dose independent rect. 8 7
6 111.01 radiation 1.0 1440 < th dose dependent rect. 8 7
15 111.29 radiation 1.0 1440 > th dose independent rect. 13 2
16 111.57 radiation 1.0 1440 > th dose independent rect. 8 7
34 112.33 radiation 1.0 1440 > th dose independent rect. 11 4
56 113.77 precipitation 0.1 270 > th dose independent rect. 2 2
57 113.87 precipitation 0.1 270 > th dose dependent rect. 2 2
63 114.15 radiation 1.0 1440 > th dose independent rect. 11 1
69 114.68 radiation 1.0 1440 > th dose independent rect. 9 1
71 114.86 atmosphere 1005.0 720 < th dose independent rect. 19 6
80 115.47 atmosphere 1005.0 720 < th dose independent rect. 20 3
85 115.71 atmosphere 1005.0 720 < th dose independent rect. 20 1
86 115.73 humidity 80.0 1440 > th dose independent rect. 12 2
89 115.92 temperature 25.0 90 > th dose independent rect. 23 19
90 115.99 atmosphere 1005.0 10 < th dose dependent rect. 24 8
116 116.61 atmosphere 1005.0 270 < th dose dependent rect. 1 1
123 116.85 humidity 80.0 1440 < th dose independent rect. 12 2
128 116.90 humidity 80.0 43200 > th dose dependent rect. 21 3
137 117.22 humidity 80.0 43200 > th dose dependent rect. 20 5
138 117.30 temperature 25.0 90 > th dose independent rect. 5 13
146 117.49 humidity 80.0 43200 > th dose dependent rect. 22 1
150 117.66 humidity 80.0 43200 > th dose dependent rect. 19 7
162 117.92 humidity 80.0 1440 > th dose dependent rect. 12 2
165 117.94 temperature 25.0 90 > th dose independent rect. 2 16
174 118.06 humidity 80.0 43200 > th dose dependent rect. 18 9
187 118.36 temperature 20.0 90 > th dose independent rect. 18 12
188 118.37 humidity 80.0 43200 > th dose dependent rect. 17 11
192 118.49 precipitation 0.1 270 > th dose independent rect. 23 5
196 118.52 humidity 60.0 14400 > th dose independent rect. 24 8
198 118.58 atmosphere 1005.0 270 < th dose dependent rect. 24 3
205 118.70 precipitation 0.1 270 > th dose dependent rect. 23 5
209 118.75 humidity 80.0 43200 > th dose dependent sin 13 NA
230 118.98 humidity 80.0 1440 < th dose independent rect. 8 7
273 119.31 humidity 90.0 43200 < th dose independent rect. 20 9
274 119.33 humidity 80.0 1440 > th dose independent rect. 7 9
295 119.44 humidity 70.0 43200 > th dose dependent rect. 10 18
296 119.45 humidity 70.0 14400 < th dose dependent rect. 21 1
310 119.49 humidity 90.0 720 > th dose dependent rect. 20 1
321 119.57 precipitation 0.1 270 > th dose independent rect. 19 9
327 119.62 humidity 80.0 43200 > th dose independent rect. 24 19
340 119.70 humidity 90.0 14400 < th dose dependent rect. 5 2
341 119.71 wind 3.0 4320 < th dose dependent rect. 4 1
343 119.72 humidity 80.0 43200 > th dose independent rect. 1 17
355 119.78 temperature 25.0 90 < th dose independent rect. 1 16
403 120.02 temperature 25.0 90 < th dose independent rect. 24 19
425 120.11 humidity 90.0 43200 < th dose independent rect. 23 2
430 120.13 humidity 80.0 43200 < th dose independent rect. 24 18
434 120.16 wind 1.0 270 < th dose independent rect. 23 3
460 120.31 humidity 60.0 14400 < th dose independent rect. 6 1
462 120.31 humidity 60.0 14400 < th dose independent rect. 20 1
464 120.31 radiation 20.0 14400 > th dose independent rect. 17 1
517 120.31 humidity 60.0 14400 < th dose dependent rect. 6 1
521 120.31 radiation 20.0 14400 > th dose dependent rect. 17 1
601 120.45 temperature 25.0 90 > th dose independent sin 1 NA
611 120.47 temperature 25.0 90 < th dose independent rect. 24 21
612 120.48 humidity 70.0 43200 > th dose dependent rect. 23 18
618 120.50 humidity 60.0 14400 > th dose independent rect. 7 1
634 120.56 wind 5.0 14400 < th dose dependent rect. 2 2
640 120.58 humidity 80.0 43200 > th dose independent rect. 2 14
642 120.59 temperature 20.0 90 > th dose independent sin 11 NA
658 120.65 radiation 20.0 14400 < th dose independent rect. 24 7
677 120.72 humidity 80.0 1440 < th dose independent sin 1 NA
689 120.75 atmosphere 1005.0 30 < th dose dependent sin 9 NA
727 120.89 humidity 70.0 14400 > th dose independent rect. 21 1
728 120.89 radiation 20.0 14400 < th dose independent rect. 5 2
729 120.89 wind 5.0 14400 < th dose independent rect. 6 4
731 120.89 atmosphere 1005.0 30 < th dose dependent rect. 18 14
733 120.90 humidity 80.0 1440 > th dose independent sin 0 NA
735 120.91 humidity 60.0 14400 > th dose independent rect. 5 3
758 120.95 humidity 70.0 43200 > th dose dependent sin 17 NA
762 120.96 radiation 20.0 14400 < th dose independent rect. 17 14
776 121.00 radiation 1.0 14400 < th dose independent rect. 8 5
791 121.04 atmosphere 1005.0 720 > th dose independent rect. 21 1
795 121.04 humidity 90.0 1440 < th dose dependent rect. 12 2
802 121.06 humidity 90.0 43200 > th dose independent rect. 1 1
804 121.06 humidity 70.0 14400 > th dose independent rect. 21 5
808 121.07 humidity 80.0 43200 > th dose independent rect. 3 12
826 121.11 radiation 1.0 14400 > th dose independent rect. 8 5
838 121.12 wind 1.0 270 < th dose dependent rect. 24 1
845 121.15 wind 5.0 14400 > th dose independent rect. 6 4
855 121.16 temperature 20.0 720 > th dose dependent rect. 4 5
868 121.20 humidity 90.0 43200 > th dose independent rect. 21 8
896 121.26 wind 1.0 14400 > th dose dependent rect. 2 2
897 121.26 humidity 50.0 1440 > th dose dependent rect. 12 2
898 121.26 humidity 90.0 720 < th dose dependent rect. 12 4
919 121.31 temperature 20.0 720 > th dose dependent rect. 5 3
935 121.35 wind 1.0 270 < th dose independent rect. 16 10
942 121.37 wind 3.0 14400 > th dose independent rect. 3 1
951 121.38 temperature 25.0 90 < th dose independent sin 1 NA
958 121.39 humidity 90.0 43200 > th dose independent rect. 23 6
974 121.42 wind 3.0 14400 < th dose independent rect. 3 1
975 121.42 humidity 90.0 43200 > th dose independent rect. 23 4
981 121.43 humidity 80.0 43200 < th dose independent rect. 2 14
982 121.43 humidity 70.0 43200 > th dose dependent no NA NA
992 121.46 wind 1.0 270 < th dose independent rect. 21 5
998 121.47 humidity 70.0 43200 > th dose dependent rect. 5 23