Os04g0465300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Gibberellin regulated protein family protein.
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Os04g0465300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Gibberellin regulated protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.84 | 0.351 | 2.62 | 1.62 | 0.0814 | -21.1 | 0.102 | 130 | 0.0171 | 8.97 | 994.7 | 751 | -- | -- |
| 58.56 | 0.359 | 2.9 | -0.0546 | 0.0892 | 0.0805 | 0.0435 | -- | 0.0111 | 7.66 | 994.7 | 158 | -- | -- |
| 55.86 | 0.348 | 2.61 | 1.62 | 0.0834 | -21.2 | -- | 130 | 0.0168 | 8.3 | 994.6 | 756 | -- | -- |
| 57.91 | 0.354 | 2.9 | -0.0736 | 0.0954 | 0.351 | -- | -- | 0.0166 | 7.44 | 998.2 | 175 | -- | -- |
| 56.24 | 0.349 | 2.61 | 1.65 | -- | -21.6 | -- | 132 | 0.0173 | -- | 994.6 | 786 | -- | -- |
| 58.57 | 0.359 | 2.9 | -0.0542 | 0.0887 | -- | 0.0435 | -- | 0.011 | 7.68 | -- | -- | -- | -- |
| 58.57 | 0.358 | 2.9 | -0.0533 | 0.0892 | -- | -- | -- | 0.0108 | 7.47 | -- | -- | -- | -- |
| 58.37 | 0.356 | 2.9 | -0.0684 | -- | 0.332 | -- | -- | 0.0187 | -- | 998.4 | 175 | -- | -- |
| 58.03 | 0.355 | 2.89 | -- | 0.0932 | 0.341 | -- | -- | 0.0244 | 7.5 | 998.1 | 177 | -- | -- |
| 59 | 0.359 | 2.9 | -0.0519 | -- | -- | -- | -- | 0.0122 | -- | -- | -- | -- | -- |
| 58.65 | 0.358 | 2.9 | -- | 0.0887 | -- | -- | -- | 0.0167 | 7.51 | -- | -- | -- | -- |
| 58.5 | 0.356 | 2.9 | -- | -- | 0.32 | -- | -- | 0.0257 | -- | 998.3 | 175 | -- | -- |
| 59.07 | 0.359 | 2.9 | -- | -- | -- | -- | -- | 0.018 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.62 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 2 | 48.11 | temperature | 25.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 5 | 50.25 | temperature | 25.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 6 | 50.34 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 3 |
| 10 | 51.30 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 13 | 51.42 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 14 | 51.44 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 15 | 51.44 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 24 | 51.48 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 26 | 51.48 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 27 | 51.48 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 31 | 51.48 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 33 | 51.48 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 38 | 51.48 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 39 | 51.48 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 40 | 51.48 | wind | 9.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 41 | 51.48 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 46 | 51.48 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 49 | 51.49 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 52 | 51.50 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 54 | 51.51 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 55 | 51.52 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 59 | 51.53 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 60 | 51.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 63 | 51.53 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 67 | 51.53 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 76 | 51.53 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 77 | 51.53 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 97 | 51.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 100 | 51.53 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 115 | 51.54 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 174 | 51.98 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 175 | 51.98 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 190 | 52.57 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 193 | 52.76 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 217 | 53.36 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 221 | 53.36 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 244 | 53.44 | humidity | 90.0 | 90 | < th | dose independent | rect. | 1 | 3 |
| 263 | 53.62 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 269 | 53.66 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 283 | 53.93 | humidity | 80.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 288 | 53.97 | humidity | 80.0 | 10 | < th | dose independent | rect. | 1 | 7 |
| 294 | 54.02 | humidity | 80.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 336 | 54.32 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 341 | 54.42 | radiation | 10.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 439 | 55.05 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 504 | 55.43 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 551 | 55.70 | wind | 1.0 | 10 | > th | dose independent | rect. | 8 | 23 |
| 565 | 55.75 | wind | 7.0 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 571 | 55.75 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 590 | 55.78 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 606 | 55.84 | atmosphere | 995.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 614 | 55.84 | atmosphere | 995.0 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 642 | 55.86 | wind | 3.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 775 | 55.99 | wind | 1.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 776 | 55.99 | atmosphere | 995.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 791 | 56.04 | atmosphere | 995.0 | 720 | > th | dose independent | sin | 9 | NA |
| 804 | 56.08 | atmosphere | 995.0 | 720 | < th | dose independent | sin | 9 | NA |
| 822 | 56.13 | wind | 1.0 | 10 | > th | dose independent | sin | 15 | NA |
| 834 | 56.15 | wind | 1.0 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 844 | 56.17 | wind | 1.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 870 | 56.23 | radiation | 10.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 908 | 56.25 | temperature | 10.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 910 | 56.25 | temperature | 10.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 923 | 56.28 | humidity | 50.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 947 | 56.29 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 952 | 56.30 | temperature | 10.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 953 | 56.30 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 954 | 56.30 | temperature | 10.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 961 | 56.31 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 987 | 56.32 | wind | 9.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 999 | 56.33 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 23 |