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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0465100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase, plant/fungal/bacterial family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.28 (0.0527) R2 : 0.379
β1 : -1.24 (0.222) R2dD : 0.0629 R2D : -0.0893
β2 : 0.895 (0.131) R2dC : 0.0695 R2C : 0.0959
β3 : 2.19 (0.251) R2dE : 0.215 R2E : 0.216
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.577 (0.126) R2dN8 : 0.0552 R2N8 : 0.117
σ : 0.951
deviance : 416.63
__
_____
C
peak time of C : 8.74
E
wheather : humidity
threshold : 89.41
memory length : 4780
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.95
open length of G : 0.638

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
411.46 0.953 6.26 -1.36 0.902 2.19 1.2 0.423 -0.59 8.55 89.24 4783 5.93 0.666
411.71 0.945 6.27 -1.31 0.904 2.23 1.28 -- -0.581 8.55 89.3 4781 5.93 0.667
415.4 0.949 6.25 -1.37 0.894 2.13 -- 0.96 -0.591 8.87 89.03 4778 5.93 0.667
416.63 0.951 6.28 -1.24 0.895 2.19 -- -- -0.577 8.74 89.41 4780 5.95 0.638
457.65 0.996 6.26 -1.48 -- 2.52 -- 0.696 -0.462 -- 89.05 4781 5.9 0.734
481.08 1.03 6.4 -0.234 1.18 -- 1.29 -- -1.16 9.07 -- -- -- --
486.62 1.03 6.4 -0.186 1.17 -- -- -- -1.16 9.29 -- -- -- --
458.56 0.997 6.27 -1.53 -- 2.7 -- -- -0.421 -- 88.92 4782 5.88 0.733
444.24 0.982 6.28 -- 1 1.56 -- -- -0.67 9.13 88.76 4765 6.01 1.25
566.77 1.11 6.43 -0.191 -- -- -- -- -1.15 -- -- -- -- --
487.53 1.03 6.39 -- 1.17 -- -- -- -1.14 9.3 -- -- -- --
496.93 1.04 6.28 -- -- 1.79 -- -- -0.533 -- 88.98 4777 5.93 1.08
567.73 1.11 6.43 -- -- -- -- -- -1.13 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 422.93 humidity 90 4320 > th dose independent rect. 6 1
2 425.00 humidity 90 4320 > th dose dependent rect. 6 1
3 429.30 humidity 90 4320 < th dose independent rect. 6 1
6 433.87 humidity 70 14400 > th dose dependent rect. 1 7
7 433.91 humidity 50 14400 > th dose dependent rect. 1 7
9 433.93 atmosphere 995 90 > th dose dependent rect. 3 22
18 434.45 humidity 70 14400 > th dose dependent rect. 6 1
22 434.78 humidity 50 14400 > th dose dependent rect. 5 2
70 437.49 atmosphere 1015 30 < th dose dependent rect. 1 15
73 437.57 wind 7 43200 > th dose dependent rect. 16 1
79 437.82 atmosphere 1015 90 < th dose dependent rect. 23 17
108 438.81 atmosphere 1000 90 > th dose independent rect. 3 22
114 438.93 humidity 90 14400 < th dose dependent rect. 6 1
118 438.99 wind 9 14400 > th dose dependent rect. 21 17
123 439.07 wind 3 43200 < th dose independent rect. 22 2
152 439.67 humidity 80 14400 > th dose independent rect. 15 17
158 439.76 atmosphere 995 90 > th dose dependent rect. 3 10
159 439.78 humidity 80 14400 < th dose independent rect. 15 17
163 439.84 humidity 70 14400 > th dose dependent rect. 23 2
164 439.84 wind 9 14400 > th dose dependent rect. 19 19
168 439.93 wind 3 43200 > th dose independent rect. 23 1
171 439.99 humidity 90 4320 > th dose dependent rect. 4 11
186 440.24 humidity 70 14400 > th dose dependent sin 9 NA
204 440.58 wind 9 14400 > th dose dependent rect. 18 22
215 440.74 temperature 20 720 > th dose independent rect. 19 12
221 440.87 wind 9 14400 > th dose dependent rect. 14 1
227 440.94 wind 9 14400 > th dose dependent rect. 21 23
262 441.33 atmosphere 1015 30 < th dose dependent rect. 1 23
303 441.80 radiation 30 4320 < th dose independent rect. 2 6
307 441.85 radiation 30 4320 < th dose independent rect. 24 8
308 441.85 humidity 90 4320 > th dose dependent sin 3 NA
312 441.88 radiation 30 4320 < th dose independent rect. 7 1
317 441.94 humidity 80 14400 > th dose independent rect. 22 15
326 442.02 wind 9 14400 > th dose independent rect. 14 2
328 442.02 radiation 30 4320 < th dose independent rect. 21 11
331 442.04 temperature 20 720 > th dose independent rect. 15 16
335 442.05 humidity 80 14400 < th dose independent rect. 21 18
341 442.08 humidity 80 14400 < th dose independent rect. 22 16
342 442.09 atmosphere 995 10 > th dose dependent rect. 4 9
343 442.11 wind 9 14400 > th dose independent rect. 11 9
355 442.16 temperature 20 720 > th dose independent rect. 12 19
363 442.20 wind 9 14400 > th dose dependent rect. 5 15
371 442.24 wind 9 14400 > th dose independent rect. 18 22
372 442.24 atmosphere 1015 10 < th dose dependent sin 6 NA
378 442.26 wind 9 14400 > th dose dependent rect. 9 11
384 442.32 wind 9 14400 > th dose dependent sin 1 NA
386 442.33 wind 9 14400 > th dose independent rect. 21 23
392 442.36 radiation 30 4320 < th dose independent rect. 17 15
409 442.52 atmosphere 995 43200 < th dose independent rect. 21 17
415 442.55 humidity 80 14400 > th dose independent sin 13 NA
419 442.57 wind 9 14400 > th dose independent rect. 21 18
443 442.70 wind 9 14400 > th dose independent rect. 13 7
444 442.70 wind 9 14400 > th dose independent rect. 5 15
449 442.72 wind 3 43200 < th dose dependent rect. 10 1
460 442.80 temperature 20 720 > th dose independent sin 11 NA
461 442.80 wind 9 14400 > th dose independent rect. 9 11
485 442.90 temperature 20 720 > th dose independent rect. 22 9
514 443.05 wind 9 14400 > th dose independent rect. 19 19
528 443.10 wind 9 14400 > th dose dependent rect. 5 9
545 443.13 wind 9 14400 > th dose dependent rect. 9 5
551 443.15 humidity 80 14400 < th dose independent sin 12 NA
555 443.16 humidity 90 4320 > th dose dependent rect. 23 19
567 443.21 atmosphere 995 43200 > th dose independent rect. 20 18
603 443.30 wind 1 14400 > th dose independent rect. 23 4
607 443.31 wind 9 14400 > th dose independent rect. 11 4
612 443.32 humidity 90 14400 < th dose dependent rect. 20 12
622 443.36 wind 1 43200 > th dose dependent rect. 22 2
641 443.42 wind 9 14400 < th dose independent rect. 14 2
648 443.43 atmosphere 1015 30 < th dose dependent rect. 5 23
674 443.55 wind 9 14400 < th dose independent rect. 21 19
685 443.60 wind 9 14400 > th dose independent sin 0 NA
697 443.64 wind 9 14400 < th dose independent rect. 13 4
706 443.68 atmosphere 995 43200 < th dose dependent sin 9 NA
709 443.69 wind 9 14400 > th dose dependent rect. 3 11
714 443.70 atmosphere 995 43200 > th dose independent rect. 1 11
748 443.82 wind 9 14400 > th dose independent rect. 11 6
757 443.86 wind 9 43200 < th dose dependent rect. 22 2
802 443.96 atmosphere 995 43200 > th dose independent rect. 2 9
822 444.02 wind 9 14400 < th dose independent rect. 11 9
828 444.03 atmosphere 995 10 > th dose dependent rect. 16 23
833 444.05 humidity 80 14400 < th dose independent sin 6 NA
866 444.15 wind 9 14400 > th dose independent rect. 5 10
879 444.17 atmosphere 1015 10 < th dose dependent rect. 23 23
881 444.18 wind 9 14400 < th dose independent rect. 11 6
887 444.19 wind 9 14400 > th dose independent rect. 9 6
928 444.28 atmosphere 995 43200 < th dose dependent rect. 21 13
964 444.37 wind 9 14400 < th dose independent rect. 13 7
965 444.37 wind 9 14400 < th dose independent rect. 22 22
970 444.39 atmosphere 995 43200 > th dose independent rect. 4 5