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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0464400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.0387) R2 : 0.0917
β1 : 0.962 (0.142) R2dD : 0.0951 R2D : 0.0857
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.125 (0.0827) R2dN8 : 0.00606 R2N8 : -0.00335
σ : 0.727
deviance : 241.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
215.27 0.689 3.48 0.733 0.382 -0.957 -0.488 -1.5 0.49 16.7 79.13 5788 -- --
216.25 0.685 3.49 0.814 0.388 -1.04 -0.484 -- 0.507 16.7 81 7070 -- --
215.15 0.683 3.47 0.715 0.375 -0.967 -- -1.52 0.508 16.5 81 5809 -- --
216.9 0.686 3.48 0.875 0.363 -1.03 -- -- 0.551 16.6 81 7066 -- --
221.55 0.693 3.46 0.662 -- -0.99 -- -1.67 0.51 -- 82 5590 -- --
233.33 0.716 3.57 0.978 0.393 -- -0.441 -- 0.137 16.7 -- -- -- --
233.82 0.716 3.57 0.977 0.389 -- -- -- 0.135 16.6 -- -- -- --
223.69 0.697 3.48 0.823 -- -1.08 -- -- 0.54 -- 81.13 7014 -- --
234.85 0.714 3.5 -- 0.352 -1.17 -- -- 0.489 16.9 81.24 7084 -- --
241.88 0.727 3.57 0.962 -- -- -- -- 0.125 -- -- -- -- --
258.96 0.753 3.6 -- 0.371 -- -- -- 0.026 16.6 -- -- -- --
241.03 0.723 3.48 -- -- -1.26 -- -- 0.519 -- 81.92 7030 -- --
266.27 0.762 3.59 -- -- -- -- -- 0.0178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.87 humidity 80 4320 < th dose independent rect. 20 16
4 214.27 humidity 80 4320 > th dose independent rect. 20 16
9 214.43 humidity 90 4320 > th dose independent rect. 6 3
11 214.48 humidity 70 4320 > th dose dependent rect. 2 9
14 214.52 humidity 80 4320 < th dose independent rect. 9 1
31 214.99 humidity 80 4320 < th dose independent rect. 21 1
32 215.03 humidity 90 4320 < th dose independent rect. 6 3
42 215.19 humidity 70 4320 > th dose independent rect. 15 1
50 215.32 humidity 80 4320 < th dose independent rect. 2 10
68 215.54 humidity 80 4320 < th dose independent sin 6 NA
74 215.59 humidity 80 4320 > th dose independent rect. 9 1
77 215.62 humidity 70 4320 > th dose dependent rect. 10 1
94 215.69 humidity 70 4320 > th dose independent rect. 8 8
95 215.69 humidity 70 4320 > th dose independent rect. 24 16
97 215.70 humidity 70 4320 > th dose independent rect. 6 10
114 215.74 humidity 80 4320 > th dose independent sin 6 NA
132 215.80 humidity 80 4320 > th dose independent rect. 2 10
142 215.86 humidity 60 4320 > th dose dependent sin 6 NA
160 215.96 humidity 70 4320 < th dose independent rect. 14 2
165 215.98 humidity 70 4320 > th dose independent rect. 10 6
190 216.07 humidity 70 4320 < th dose independent rect. 8 8
192 216.07 humidity 70 4320 < th dose independent rect. 6 10
211 216.08 humidity 80 4320 > th dose independent rect. 21 1
316 216.42 humidity 70 4320 < th dose independent rect. 10 6
398 216.60 humidity 70 4320 > th dose independent sin 3 NA
418 216.66 humidity 90 4320 < th dose dependent rect. 22 14
524 216.91 humidity 90 4320 < th dose dependent sin 7 NA
605 217.13 humidity 80 4320 > th dose independent rect. 20 3
720 217.41 humidity 90 4320 < th dose dependent rect. 2 9
832 217.64 humidity 80 4320 < th dose independent rect. 2 22
874 217.71 humidity 70 4320 > th dose independent rect. 10 23
879 217.72 humidity 70 4320 < th dose independent rect. 11 1
894 217.75 humidity 80 4320 < th dose independent no NA NA
922 217.80 humidity 80 4320 < th dose independent rect. 7 23
927 217.82 humidity 80 4320 < th dose independent rect. 5 23
994 217.94 humidity 70 4320 > th dose independent rect. 8 23