Os04g0463800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os04g0463800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120.9 | 0.517 | 4.3 | 1.39 | 2.15 | -0.919 | 1.02 | -4.9 | 0.592 | 17.2 | 25.71 | 1007 | -- | -- |
| 141.09 | 0.557 | 4.43 | 0.402 | 1.9 | -1.18 | 1.13 | -- | 0.342 | 17.9 | 33.66 | 114 | -- | -- |
| 122.36 | 0.515 | 4.31 | 1.37 | 2.09 | -0.844 | -- | -4.69 | 0.593 | 17.1 | 26.31 | 795 | -- | -- |
| 143.86 | 0.562 | 4.42 | 0.403 | 1.91 | -1.19 | -- | -- | 0.353 | 17.8 | 35.4 | 110 | -- | -- |
| 258.84 | 0.749 | 4.35 | 0.729 | -- | -2.71 | -- | -4.83 | 0.288 | -- | 40 | 314 | -- | -- |
| 155.45 | 0.585 | 4.39 | 0.636 | 2.13 | -- | 0.969 | -- | 0.517 | 17.4 | -- | -- | -- | -- |
| 157.63 | 0.588 | 4.38 | 0.635 | 2.13 | -- | -- | -- | 0.522 | 17.3 | -- | -- | -- | -- |
| 272.51 | 0.769 | 4.44 | -0.0224 | -- | -2.87 | -- | -- | 0.0822 | -- | 42.53 | 267 | -- | -- |
| 147.73 | 0.569 | 4.44 | -- | 1.87 | -1.39 | -- | -- | 0.285 | 17.9 | 35.4 | 110 | -- | -- |
| 395.24 | 0.929 | 4.36 | 0.561 | -- | -- | -- | -- | 0.468 | -- | -- | -- | -- | -- |
| 168.24 | 0.607 | 4.4 | -- | 2.12 | -- | -- | -- | 0.451 | 17.3 | -- | -- | -- | -- |
| 272.53 | 0.769 | 4.44 | -- | -- | -2.86 | -- | -- | 0.0855 | -- | 50.35 | 267 | -- | -- |
| 403.55 | 0.938 | 4.37 | -- | -- | -- | -- | -- | 0.406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 19 |
| 9 | 120.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 81 | 121.77 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 85 | 121.85 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 86 | 121.86 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 98 | 121.96 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 20 |
| 123 | 122.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 18 |
| 124 | 122.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 167 | 122.51 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 173 | 122.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 219 | 122.88 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 242 | 123.01 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 246 | 123.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 255 | 123.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 265 | 123.15 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 11 |
| 284 | 123.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 3 |
| 298 | 123.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 322 | 123.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 328 | 123.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 330 | 123.48 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 13 |
| 387 | 123.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 390 | 123.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 482 | 124.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 489 | 124.23 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 23 |
| 511 | 124.31 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 7 |
| 519 | 124.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 12 |
| 557 | 124.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 560 | 124.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 578 | 124.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 609 | 124.74 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 624 | 124.87 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 23 |
| 664 | 124.96 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 680 | 125.02 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 689 | 125.04 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 720 | 125.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 791 | 125.26 | radiation | 20 | 270 | < th | dose independent | no | NA | NA |
| 871 | 125.41 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 13 |
| 891 | 125.45 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 905 | 125.48 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 957 | 125.57 | radiation | 30 | 270 | < th | dose independent | rect. | 8 | 23 |
| 962 | 125.58 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 995 | 125.63 | radiation | 20 | 270 | < th | dose independent | rect. | 19 | 23 |