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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0463300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pentatricopeptide repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.99 (0.0404) R2 : 0.484
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.35 (0.128) R2dC : 0.573 R2C : 0.00295
β3 : 1.44 (0.0968) R2dE : 0.377 R2E : -0.247
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.01 (0.0871) R2dN8 : 0.193 R2N8 : 0.041
σ : 0.756
deviance : 263.51
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C
peak time of C : 17.8
E
wheather : temperature
threshold : 25.7
memory length : 221
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.1
open length of G : 17.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.58 0.73 4.97 0.714 2.26 1.39 1.11 -1.43 1.11 18 25.4 221 12.5 18.5
250.88 0.738 4.97 0.639 2.23 1.43 1.51 -- 1.08 17.8 25.7 222 12.9 18.1
243.65 0.727 4.97 0.723 2.31 1.4 -- -1.6 1.11 17.9 25.44 220 12.9 18.4
255.5 0.744 4.99 0.557 2.4 1.48 -- -- 1.04 17.8 25.6 221 13.2 17.8
355.48 0.878 5.03 0.292 -- 1.53 -- -1.12 0.609 -- 66.24 237 10.5 19.7
329.98 0.852 5.06 0.383 1.62 -- 0.261 -- 0.7 20.1 -- -- -- --
330.17 0.851 5.06 0.375 1.62 -- -- -- 0.7 20.2 -- -- -- --
359.02 0.882 5.03 0.3 -- 1.54 -- -- 0.612 -- 88.4 237 10.5 19.7
263.51 0.756 4.99 -- 2.35 1.44 -- -- 1.01 17.8 25.7 221 13.1 17.8
474.32 1.02 5.01 0.362 -- -- -- -- 0.681 -- -- -- -- --
333.89 0.855 5.07 -- 1.62 -- -- -- 0.658 20.2 -- -- -- --
361.39 0.885 5.04 -- -- 1.54 -- -- 0.582 -- 117.1 237 10.5 19.6
477.78 1.02 5.02 -- -- -- -- -- 0.64 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.58 temperature 25 270 < th dose independent rect. 12 18
4 258.65 radiation 1 720 < th dose independent rect. 11 13
6 258.85 radiation 1 720 < th dose independent rect. 7 17
7 259.01 radiation 1 720 > th dose independent rect. 7 12
23 260.56 radiation 1 270 > th dose independent rect. 15 23
24 260.58 humidity 50 30 > th dose dependent rect. 12 21
31 261.82 radiation 1 720 < th dose dependent rect. 11 13
38 262.17 radiation 1 270 < th dose independent rect. 3 15
44 262.61 radiation 1 720 < th dose dependent rect. 7 17
47 262.71 radiation 1 90 < th dose independent rect. 5 12
52 263.02 radiation 10 90 < th dose dependent rect. 5 12
60 263.83 radiation 1 720 < th dose independent rect. 3 21
65 264.71 radiation 1 270 < th dose dependent rect. 3 15
77 265.34 radiation 1 720 < th dose independent sin 15 NA
123 266.95 radiation 1 720 > th dose independent rect. 15 4
147 267.81 radiation 1 720 < th dose independent rect. 11 19
154 268.09 radiation 1 90 < th dose independent rect. 5 10
168 268.62 radiation 1 720 < th dose dependent sin 19 NA
210 269.41 radiation 1 720 < th dose dependent rect. 3 21
211 269.45 radiation 1 720 < th dose independent rect. 1 23
218 269.63 radiation 1 720 > th dose independent sin 20 NA
231 269.93 humidity 60 1440 > th dose dependent rect. 10 4
243 270.31 radiation 1 270 > th dose independent sin 2 NA
272 270.84 humidity 80 1440 < th dose independent rect. 8 7
285 271.12 humidity 90 1440 < th dose dependent rect. 10 4
291 271.21 radiation 1 720 > th dose independent rect. 13 23
301 271.42 radiation 20 720 < th dose dependent rect. 13 18
321 272.11 radiation 10 90 < th dose dependent rect. 5 3
338 272.46 radiation 1 270 < th dose independent rect. 21 23
348 272.80 radiation 1 720 < th dose independent rect. 7 23
349 272.82 humidity 70 1440 > th dose independent rect. 10 4
364 273.09 humidity 60 30 > th dose dependent rect. 12 23
389 273.46 humidity 80 1440 > th dose independent rect. 8 8
397 273.63 humidity 70 1440 > th dose independent rect. 9 6
419 273.94 radiation 1 270 < th dose independent sin 2 NA
454 274.47 wind 1 270 > th dose independent rect. 4 1
484 274.78 humidity 70 1440 > th dose independent rect. 19 20
500 274.91 humidity 80 1440 < th dose independent rect. 11 3
541 275.15 humidity 70 1440 > th dose independent rect. 24 15
548 275.18 humidity 70 1440 > th dose independent rect. 22 17
620 275.79 temperature 30 90 < th dose dependent rect. 13 19
637 275.97 radiation 1 270 < th dose independent rect. 3 5
670 276.28 radiation 1 270 < th dose dependent sin 2 NA
671 276.29 humidity 80 30 > th dose independent rect. 5 15
701 276.56 radiation 1 270 < th dose dependent rect. 3 5
794 277.16 humidity 80 1440 < th dose independent sin 2 NA
831 277.48 humidity 80 1440 < th dose dependent sin 4 NA
870 277.82 humidity 80 1440 > th dose independent sin 2 NA
925 278.28 radiation 1 720 < th dose independent no NA NA
938 278.41 radiation 1 720 > th dose independent no NA NA
939 278.41 temperature 25 270 > th dose independent rect. 16 9
990 278.44 humidity 80 90 > th dose dependent rect. 5 2
999 278.57 temperature 25 720 > th dose independent rect. 15 4