Os04g0463100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os04g0463100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.78 | 0.384 | 12.2 | -2.57 | 1.07 | -1.94 | 0.148 | 0.198 | -0.43 | 2.27 | 28.36 | 270 | -- | -- |
| 66.77 | 0.381 | 12.2 | -2.54 | 1.04 | -1.95 | 0.197 | -- | -0.431 | 2.28 | 28.08 | 291 | -- | -- |
| 66.71 | 0.38 | 12.2 | -2.57 | 1 | -1.94 | -- | 0.267 | -0.427 | 2.46 | 28.18 | 327 | -- | -- |
| 66.81 | 0.381 | 12.2 | -2.53 | 1 | -1.94 | -- | -- | -0.426 | 2.45 | 28.07 | 327 | -- | -- |
| 78.7 | 0.413 | 12.2 | -2.77 | -- | -2.08 | -- | 0.589 | -0.472 | -- | 29.83 | 989 | -- | -- |
| 118.88 | 0.511 | 12.1 | -2.03 | 0.678 | -- | 0.0947 | -- | -0.00322 | 0.53 | -- | -- | -- | -- |
| 118.92 | 0.511 | 12.1 | -2.03 | 0.678 | -- | -- | -- | -0.00371 | 0.534 | -- | -- | -- | -- |
| 79.14 | 0.414 | 12.2 | -2.62 | -- | -2.05 | -- | -- | -0.434 | -- | 29.33 | 981 | -- | -- |
| 217.26 | 0.686 | 12.1 | -- | 0.805 | -0.919 | -- | -- | 0.0575 | 1.74 | 28.58 | 300 | -- | -- |
| 147.73 | 0.568 | 12.1 | -2.01 | -- | -- | -- | -- | 0.00777 | -- | -- | -- | -- | -- |
| 227.81 | 0.706 | 12 | -- | 0.648 | -- | -- | -- | 0.223 | 0.379 | -- | -- | -- | -- |
| 236.37 | 0.716 | 12.1 | -- | -- | -0.992 | -- | -- | 0.1 | -- | 35.91 | 930 | -- | -- |
| 254.2 | 0.744 | 12 | -- | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 3 | 66.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 4 | 67.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 6 | 67.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 9 | 67.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 17 | 67.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 21 | 67.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 22 | 67.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 33 | 67.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 36 | 67.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 39 | 67.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 6 |
| 47 | 67.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 52 | 67.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 59 | 67.87 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 61 | 67.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 64 | 67.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 164 | 68.26 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 221 | 68.39 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 285 | 68.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 411 | 69.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 734 | 69.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 751 | 69.97 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 808 | 70.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 827 | 70.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 832 | 70.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 843 | 70.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 865 | 70.17 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 958 | 70.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 9 |