Os04g0463000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os04g0463000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 332.41 | 0.857 | 4.94 | -0.196 | 0.0587 | 0.103 | 3.58 | 4.37 | -0.271 | 20 | 90.69 | 261 | -- | -- |
| 351.16 | 0.873 | 4.95 | -0.0482 | 0.0905 | 1.26 | 2.95 | -- | -0.264 | 21.4 | 95.66 | 480 | -- | -- |
| 353.52 | 0.882 | 4.95 | -0.253 | 0.302 | -0.146 | -- | 2.74 | -0.313 | 2.78 | 87.71 | 28 | -- | -- |
| 368.69 | 0.894 | 4.99 | -0.118 | 0.369 | 1.62 | -- | -- | -0.291 | 1.26 | 95.76 | 537 | -- | -- |
| 355.09 | 0.878 | 4.95 | -0.291 | -- | 0.0792 | -- | 2.62 | -0.27 | -- | 84.17 | 21 | -- | -- |
| 353.37 | 0.881 | 4.98 | -0.0388 | 0.194 | -- | 2.47 | -- | -0.255 | 23 | -- | -- | -- | -- |
| 375.6 | 0.908 | 4.98 | -0.149 | 0.312 | -- | -- | -- | -0.27 | 2.77 | -- | -- | -- | -- |
| 374.75 | 0.902 | 4.97 | -0.0947 | -- | 1.18 | -- | -- | -0.23 | -- | 95.79 | 480 | -- | -- |
| 368.04 | 0.894 | 4.97 | -- | 0.346 | 1.41 | -- | -- | -0.218 | 1.94 | 95.79 | 509 | -- | -- |
| 381.24 | 0.912 | 4.98 | -0.135 | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
| 376.18 | 0.907 | 4.97 | -- | 0.309 | -- | -- | -- | -0.254 | 2.77 | -- | -- | -- | -- |
| 374.99 | 0.902 | 4.97 | -- | -- | 1.21 | -- | -- | -0.219 | -- | 95.8 | 480 | -- | -- |
| 381.72 | 0.912 | 4.97 | -- | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 326.47 | humidity | 90 | 270 | < th | dose independent | rect. | 24 | 9 |
| 5 | 328.41 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 9 |
| 7 | 329.16 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 3 | 2 |
| 9 | 329.18 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 11 | 329.23 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 13 | 329.25 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 16 | 329.29 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 17 | 329.29 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 20 | 329.30 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 25 | 329.31 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 22 | 7 |
| 30 | 329.31 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 21 | 15 |
| 46 | 329.34 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 62 | 329.36 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 3 | 9 |
| 92 | 329.40 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 8 | NA |
| 138 | 329.46 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 143 | 329.47 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 7 | 5 |
| 147 | 329.48 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 178 | 329.55 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 333 | 329.91 | atmosphere | 1005 | 14400 | > th | dose dependent | no | NA | NA |
| 340 | 329.92 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 10 | 23 |
| 343 | 329.93 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 354 | 329.94 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 407 | 330.02 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 582 | 330.39 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 4 | NA |
| 605 | 330.43 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 638 | 330.51 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 649 | 330.53 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 664 | 330.55 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 5 | 19 |
| 737 | 330.66 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 3 | NA |
| 787 | 330.71 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 852 | 330.78 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 864 | 330.80 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 887 | 330.82 | atmosphere | 1010 | 14400 | < th | dose independent | no | NA | NA |
| 908 | 330.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 938 | 330.87 | humidity | 90 | 10 | < th | dose independent | rect. | 24 | 12 |
| 961 | 330.90 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 989 | 330.96 | humidity | 90 | 270 | < th | dose independent | rect. | 24 | 19 |
| 996 | 330.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 11 |