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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0461800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Actin-binding FH2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0488) R2 : 0.00572
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.167 (0.103) R2dN8 : 0.00738 R2N8 : 0.00572
σ : 0.92
deviance : 388.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
364.03 0.896 3.19 -0.476 0.241 -0.00473 -1.58 -2.37 -0.22 9.52 19.79 29 -- --
376.07 0.91 3.2 -0.413 0.136 -0.225 -1.06 -- -0.216 3.82 7.94 25 -- --
365.76 0.898 3.19 -0.448 0.185 -0.133 -- -1.71 -0.213 8.29 22.48 23 -- --
378.89 0.907 3.2 -0.385 0.157 -0.233 -- -- -0.228 4.62 7.973 25 -- --
367.47 0.898 3.19 -0.448 -- -0.182 -- -1.72 -0.213 -- 22.48 23 -- --
379.76 0.914 3.19 -0.428 0.221 -- 0.536 -- -0.212 11.4 -- -- -- --
380.36 0.913 3.19 -0.41 0.247 -- -- -- -0.213 9.62 -- -- -- --
379.94 0.908 3.2 -0.402 -- -0.203 -- -- -0.226 -- 7.74 48 -- --
382.63 0.911 3.2 -- 0.151 -0.238 -- -- -0.215 4.9 7.951 56 -- --
383.99 0.916 3.2 -0.412 -- -- -- -- -0.212 -- -- -- -- --
384.8 0.918 3.18 -- 0.248 -- -- -- -0.167 9.75 -- -- -- --
383.82 0.915 3.18 -- -- -0.212 -- -- -0.159 -- 9.05 49 -- --
388.47 0.92 3.18 -- -- -- -- -- -0.167 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 358.70 wind 1.0 30 < th dose dependent rect. 12 2
3 359.03 radiation 20.0 30 < th dose independent rect. 4 13
6 359.17 radiation 20.0 30 < th dose independent rect. 4 22
7 359.36 wind 1.0 90 < th dose independent rect. 13 1
9 359.42 radiation 20.0 30 < th dose independent rect. 4 10
14 360.52 radiation 20.0 30 < th dose independent rect. 7 7
15 360.61 radiation 20.0 30 < th dose independent rect. 20 21
19 361.07 radiation 20.0 30 < th dose independent rect. 7 10
21 361.40 radiation 20.0 30 < th dose independent rect. 22 19
22 361.42 wind 9.0 30 > th dose dependent sin 4 NA
28 361.91 radiation 20.0 30 < th dose independent rect. 22 16
29 361.91 precipitation 0.1 720 < th dose independent rect. 20 19
30 361.91 precipitation 0.1 720 < th dose dependent rect. 20 19
34 362.23 radiation 20.0 30 < th dose independent rect. 20 18
43 362.60 wind 9.0 30 > th dose dependent rect. 11 3
45 362.63 temperature 30.0 10 > th dose independent rect. 14 1
55 362.80 radiation 20.0 30 < th dose independent rect. 4 20
56 362.83 wind 9.0 30 > th dose independent rect. 11 5
58 362.87 wind 9.0 30 > th dose dependent rect. 1 15
68 362.90 wind 9.0 30 > th dose dependent rect. 1 13
76 362.91 temperature 30.0 720 < th dose independent rect. 16 4
77 362.93 radiation 40.0 30 < th dose dependent rect. 4 13
116 363.09 radiation 20.0 30 < th dose dependent rect. 7 7
117 363.10 temperature 30.0 720 < th dose independent rect. 16 11
119 363.16 radiation 40.0 90 < th dose independent rect. 12 13
132 363.37 radiation 20.0 30 < th dose independent sin 3 NA
138 363.58 radiation 20.0 30 < th dose independent rect. 7 23
141 363.68 wind 9.0 30 > th dose independent rect. 1 15
173 363.81 wind 9.0 30 < th dose independent sin 6 NA
175 363.81 radiation 40.0 10 < th dose dependent rect. 4 22
206 363.93 radiation 20.0 30 < th dose independent rect. 7 19
223 364.09 radiation 20.0 30 < th dose independent rect. 1 23
227 364.13 radiation 20.0 30 < th dose independent rect. 9 23
232 364.19 radiation 20.0 30 < th dose independent rect. 11 23
233 364.20 temperature 20.0 270 < th dose independent rect. 3 2
234 364.21 radiation 1.0 10 < th dose independent rect. 11 3
242 364.21 radiation 1.0 10 < th dose dependent rect. 11 3
250 364.22 wind 9.0 30 > th dose independent sin 2 NA
253 364.25 radiation 20.0 30 < th dose independent rect. 15 23
256 364.26 radiation 20.0 30 < th dose independent no NA NA
257 364.28 precipitation 0.1 720 < th dose independent rect. 20 11
258 364.28 precipitation 0.1 720 < th dose dependent rect. 20 11
284 364.32 temperature 20.0 30 < th dose dependent rect. 12 2
287 364.34 temperature 20.0 30 < th dose independent rect. 12 2
293 364.36 radiation 20.0 30 < th dose independent rect. 13 23
297 364.39 radiation 1.0 10 < th dose independent rect. 13 1
307 364.39 radiation 1.0 10 < th dose dependent rect. 13 1
340 364.57 temperature 20.0 10 < th dose dependent rect. 3 1
345 364.62 temperature 25.0 10 < th dose dependent rect. 6 2
349 364.65 wind 7.0 720 < th dose independent rect. 2 6
372 364.71 wind 9.0 30 > th dose independent rect. 11 3
378 364.76 precipitation 0.1 720 < th dose independent rect. 2 6
381 364.76 precipitation 0.1 720 < th dose dependent rect. 2 6
384 364.78 radiation 20.0 30 < th dose independent rect. 7 17
393 364.90 temperature 30.0 720 < th dose independent rect. 17 15
397 364.94 atmosphere 1000.0 720 > th dose independent rect. 20 18
401 364.97 atmosphere 1000.0 720 > th dose independent rect. 2 6
404 364.99 radiation 30.0 10 < th dose independent rect. 13 13
414 365.06 temperature 30.0 720 < th dose independent rect. 16 19
419 365.10 wind 9.0 30 < th dose independent rect. 8 14
445 365.20 radiation 20.0 30 < th dose independent rect. 23 23
463 365.35 temperature 30.0 30 < th dose dependent rect. 17 11
470 365.44 precipitation 0.1 720 < th dose independent rect. 20 3
472 365.44 precipitation 0.1 720 < th dose dependent rect. 20 3
474 365.45 precipitation 0.1 720 < th dose independent rect. 9 23
475 365.45 precipitation 0.1 720 < th dose dependent rect. 9 23
480 365.50 precipitation 0.1 720 < th dose independent rect. 11 21
481 365.50 precipitation 0.1 720 < th dose dependent rect. 11 21
500 365.66 atmosphere 995.0 720 > th dose independent rect. 8 18
503 365.68 atmosphere 995.0 720 > th dose independent rect. 15 5
512 365.77 radiation 20.0 10 > th dose independent sin 4 NA
539 365.82 wind 9.0 30 < th dose independent rect. 8 12
544 365.86 radiation 20.0 30 > th dose independent rect. 16 23
548 365.88 radiation 20.0 30 > th dose independent rect. 7 8
631 365.98 temperature 10.0 720 > th dose independent rect. 15 5
632 365.98 atmosphere 1015.0 720 < th dose independent rect. 15 5
633 365.98 temperature 10.0 720 > th dose independent rect. 20 19
640 366.01 temperature 10.0 720 > th dose independent rect. 3 5
641 366.01 temperature 30.0 720 < th dose independent rect. 3 5
642 366.01 humidity 50.0 720 > th dose independent rect. 3 5
645 366.01 temperature 10.0 720 > th dose independent rect. 8 19
647 366.02 temperature 25.0 10 < th dose dependent rect. 8 1
649 366.03 humidity 50.0 720 > th dose independent rect. 20 18
680 366.14 radiation 40.0 30 < th dose dependent rect. 20 21
696 366.18 atmosphere 1015.0 720 < th dose independent rect. 3 5
712 366.19 wind 1.0 720 > th dose independent rect. 8 1
715 366.21 radiation 40.0 720 < th dose independent rect. 3 5
716 366.21 wind 3.0 90 < th dose dependent rect. 22 1
723 366.25 wind 9.0 30 < th dose independent rect. 8 23
729 366.29 radiation 20.0 10 > th dose independent no NA NA
843 366.31 wind 5.0 10 < th dose dependent rect. 9 12
854 366.38 atmosphere 995.0 270 > th dose independent rect. 15 12
858 366.40 radiation 20.0 10 > th dose independent rect. 13 23
864 366.44 radiation 20.0 10 > th dose independent rect. 9 23
868 366.45 radiation 40.0 30 < th dose dependent rect. 22 19
877 366.50 wind 9.0 30 > th dose independent rect. 11 1
882 366.53 radiation 30.0 10 < th dose independent rect. 14 1
890 366.55 precipitation 0.1 720 < th dose independent rect. 14 6
891 366.55 radiation 20.0 10 > th dose independent rect. 11 23
893 366.55 precipitation 0.1 720 < th dose dependent rect. 14 6
911 366.64 temperature 30.0 720 < th dose independent rect. 23 13
923 366.68 radiation 1.0 30 < th dose dependent rect. 15 13