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Os04g0461400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.36 (0.0228) R2 : 0.459
β1 : -0.888 (0.0836) R2dD : 0.139 R2D : 0.131
β2 : 0.98 (0.0591) R2dC : 0.327 R2C : 0.318
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0166 (0.0487) R2dN8 : 0.000185 R2N8 : 0.00146
σ : 0.429
deviance : 83.96
__
_____
C
peak time of C : 4.95
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.07 0.402 7.29 -1.1 0.967 -1.15 -0.229 -4.92 0.0871 4.59 4.557 2177 -- --
81.43 0.42 7.36 -0.997 0.97 -0.53 -0.21 -- 0.0231 4.72 3.8 2060 -- --
73.2 0.398 7.29 -1.1 0.966 -1.14 -- -4.94 0.0885 4.6 4.565 2178 -- --
81.26 0.42 7.35 -0.997 0.947 -0.577 -- -- 0.0682 4.63 3.232 2060 -- --
116.3 0.505 7.37 -1.03 -- -0.582 -- -0.557 0.0304 -- 4.421 1909 -- --
83.88 0.429 7.36 -0.889 0.981 -- -0.187 -- 0.0157 4.92 -- -- -- --
83.96 0.429 7.36 -0.888 0.98 -- -- -- 0.0166 4.95 -- -- -- --
106.59 0.483 7.38 -1.04 -- -0.561 -- -- 0.0346 -- 3.232 2060 -- --
102.76 0.472 7.34 -- 0.978 0.322 -- -- 0.119 5.13 7.231 1778 -- --
134.52 0.542 7.37 -0.852 -- -- -- -- 0.0418 -- -- -- -- --
104.76 0.479 7.34 -- 0.964 -- -- -- 0.116 4.98 -- -- -- --
134.26 0.541 7.35 -- -- -0.46 -- -- 0.148 -- 3.232 2060 -- --
153.68 0.579 7.35 -- -- -- -- -- 0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 70.86 precipitation 0.1 4320 > th dose independent rect. 5 4
2 70.86 precipitation 0.1 4320 > th dose dependent rect. 5 4
3 70.89 precipitation 0.1 4320 > th dose dependent rect. 24 17
5 70.94 precipitation 0.1 4320 > th dose dependent rect. 3 14
6 70.95 precipitation 0.1 4320 > th dose independent rect. 3 14
8 70.96 precipitation 0.1 4320 > th dose dependent rect. 3 12
11 70.99 precipitation 0.1 4320 > th dose independent rect. 3 11
12 71.00 precipitation 0.1 4320 < th dose independent rect. 5 4
14 71.00 precipitation 0.1 4320 < th dose dependent rect. 5 4
16 71.02 precipitation 0.1 4320 < th dose independent rect. 3 14
17 71.02 precipitation 0.1 4320 < th dose dependent rect. 3 14
21 71.11 precipitation 0.1 4320 < th dose independent rect. 3 12
23 71.11 precipitation 0.1 4320 < th dose dependent rect. 3 12
29 71.24 precipitation 0.1 4320 > th dose independent rect. 1 16
32 71.26 precipitation 0.1 4320 < th dose independent rect. 24 17
33 71.26 precipitation 0.1 4320 < th dose dependent rect. 24 17
64 71.55 precipitation 0.1 14400 > th dose independent rect. 17 1
71 71.58 precipitation 0.1 4320 < th dose independent rect. 3 9
72 71.58 precipitation 0.1 4320 < th dose dependent rect. 3 9
88 71.69 precipitation 0.1 4320 > th dose independent rect. 7 2
90 71.69 precipitation 0.1 4320 > th dose dependent rect. 7 2
95 71.72 precipitation 0.1 14400 > th dose dependent rect. 17 1
116 71.94 precipitation 0.1 14400 < th dose independent rect. 17 1
117 71.94 precipitation 0.1 14400 < th dose dependent rect. 17 1
152 72.14 precipitation 0.1 4320 > th dose independent sin 4 NA
158 72.15 precipitation 0.1 4320 > th dose dependent sin 5 NA
164 72.23 precipitation 0.1 4320 < th dose independent sin 4 NA
165 72.23 precipitation 0.1 4320 < th dose dependent sin 4 NA
178 72.34 precipitation 0.1 4320 < th dose independent rect. 7 2
179 72.34 precipitation 0.1 4320 < th dose dependent rect. 7 2
182 72.37 precipitation 0.1 4320 > th dose dependent rect. 18 23
188 72.41 humidity 90.0 4320 > th dose dependent rect. 7 2
230 72.79 precipitation 0.1 4320 > th dose dependent rect. 18 15
231 72.79 precipitation 0.1 4320 > th dose dependent rect. 18 18
237 72.82 wind 1.0 1440 < th dose independent rect. 9 10
245 72.86 humidity 80.0 4320 < th dose independent rect. 9 1
246 72.86 humidity 60.0 1440 > th dose dependent rect. 2 10
259 73.02 humidity 70.0 4320 < th dose independent rect. 15 1
279 73.12 precipitation 0.1 14400 < th dose independent rect. 14 2
282 73.12 precipitation 0.1 14400 < th dose dependent rect. 14 2
287 73.13 humidity 80.0 4320 > th dose independent rect. 9 1
306 73.22 humidity 80.0 1440 < th dose independent rect. 11 1
308 73.23 wind 1.0 1440 < th dose dependent rect. 9 10
311 73.24 precipitation 0.1 14400 > th dose independent rect. 13 3
318 73.26 precipitation 0.1 14400 > th dose dependent rect. 14 2
338 73.32 humidity 70.0 4320 > th dose independent rect. 15 1
349 73.35 wind 1.0 1440 < th dose independent rect. 12 7
358 73.37 radiation 1.0 90 > th dose dependent rect. 11 23
370 73.43 humidity 70.0 720 > th dose independent rect. 23 15
374 73.44 precipitation 0.1 4320 > th dose dependent rect. 10 7
376 73.45 precipitation 0.1 4320 < th dose independent rect. 24 9
378 73.45 precipitation 0.1 4320 < th dose dependent rect. 24 9
384 73.48 humidity 70.0 4320 < th dose independent rect. 10 3
395 73.51 precipitation 0.1 4320 > th dose independent rect. 24 9
413 73.55 wind 1.0 4320 > th dose independent rect. 18 2
432 73.59 humidity 70.0 720 > th dose independent rect. 23 17
435 73.60 humidity 70.0 720 > th dose independent rect. 7 7
450 73.63 wind 1.0 1440 > th dose independent rect. 9 11
466 73.66 humidity 90.0 1440 < th dose dependent rect. 1 11
469 73.67 humidity 70.0 1440 > th dose dependent rect. 11 1
485 73.70 precipitation 0.1 4320 > th dose independent rect. 24 20
497 73.74 precipitation 0.1 4320 < th dose independent rect. 24 20
498 73.74 precipitation 0.1 4320 > th dose independent rect. 18 23
499 73.74 precipitation 0.1 4320 < th dose independent rect. 18 23
503 73.74 precipitation 0.1 4320 < th dose dependent rect. 24 20
504 73.74 precipitation 0.1 4320 < th dose dependent rect. 18 23
507 73.75 humidity 70.0 720 > th dose independent rect. 1 13
513 73.76 humidity 80.0 1440 > th dose independent rect. 8 4
517 73.76 radiation 10.0 4320 < th dose dependent rect. 7 1
519 73.77 humidity 70.0 720 < th dose independent rect. 8 8
520 73.77 humidity 70.0 720 < th dose independent rect. 6 10
540 73.78 wind 5.0 1440 < th dose dependent rect. 9 6
543 73.80 humidity 70.0 720 > th dose independent sin 3 NA
548 73.81 wind 7.0 1440 < th dose dependent rect. 12 1
549 73.81 humidity 70.0 1440 > th dose dependent rect. 8 4
569 73.84 radiation 40.0 90 < th dose dependent rect. 17 23
578 73.87 humidity 80.0 1440 > th dose independent rect. 4 8
583 73.88 humidity 80.0 1440 < th dose independent rect. 8 4
590 73.89 humidity 60.0 1440 > th dose dependent sin 5 NA
610 73.92 wind 1.0 1440 > th dose independent rect. 12 7
613 73.92 humidity 70.0 1440 > th dose independent rect. 20 17
624 73.93 wind 1.0 1440 < th dose dependent rect. 12 7
643 73.96 humidity 70.0 720 > th dose dependent sin 2 NA
650 73.98 wind 1.0 1440 < th dose independent rect. 9 5
741 74.11 wind 1.0 43200 > th dose dependent rect. 5 1
790 74.17 humidity 70.0 4320 < th dose independent rect. 10 6
831 74.20 humidity 70.0 720 > th dose dependent rect. 2 16
853 74.23 wind 1.0 1440 > th dose dependent rect. 12 1
888 74.26 wind 1.0 4320 < th dose independent rect. 17 2
903 74.28 humidity 70.0 1440 < th dose independent rect. 6 7
922 74.29 wind 5.0 43200 < th dose dependent rect. 5 1
954 74.33 radiation 10.0 4320 < th dose dependent rect. 7 4
981 74.36 wind 1.0 1440 > th dose dependent rect. 9 6
996 74.38 humidity 80.0 720 < th dose independent sin 3 NA