Os04g0461300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor, MADS-box domain containing protein.
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Os04g0461300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor, MADS-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 316.4 | 0.836 | 5.04 | -0.468 | 0.77 | 1.36 | -0.0953 | 0.468 | -0.221 | 12.5 | 24.1 | 441 | -- | -- |
| 316.68 | 0.829 | 5.02 | -0.396 | 0.783 | 1.33 | -0.128 | -- | -0.201 | 12.5 | 24.12 | 423 | -- | -- |
| 316.44 | 0.829 | 5.04 | -0.471 | 0.774 | 1.35 | -- | 0.459 | -0.223 | 12.5 | 24.1 | 433 | -- | -- |
| 316.71 | 0.829 | 5.03 | -0.394 | 0.787 | 1.32 | -- | -- | -0.203 | 12.5 | 24.11 | 423 | -- | -- |
| 341.11 | 0.86 | 5.02 | -0.365 | -- | 1.51 | -- | 0.261 | -0.132 | -- | 26.4 | 817 | -- | -- |
| 340.06 | 0.865 | 5.08 | -0.726 | 0.79 | -- | -0.123 | -- | -0.443 | 11.9 | -- | -- | -- | -- |
| 340.12 | 0.864 | 5.08 | -0.731 | 0.79 | -- | -- | -- | -0.444 | 11.9 | -- | -- | -- | -- |
| 341.23 | 0.86 | 5.02 | -0.314 | -- | 1.52 | -- | -- | -0.115 | -- | 26.5 | 816 | -- | -- |
| 320.38 | 0.834 | 5.01 | -- | 0.737 | 1.36 | -- | -- | -0.123 | 12.6 | 24.84 | 499 | -- | -- |
| 379.43 | 0.91 | 5.1 | -0.755 | -- | -- | -- | -- | -0.455 | -- | -- | -- | -- | -- |
| 354.19 | 0.88 | 5.06 | -- | 0.8 | -- | -- | -- | -0.363 | 12 | -- | -- | -- | -- |
| 343.51 | 0.863 | 5.01 | -- | -- | 1.65 | -- | -- | -0.0561 | -- | 26.57 | 824 | -- | -- |
| 394.45 | 0.927 | 5.08 | -- | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 306.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 2 | 308.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 12 |
| 24 | 310.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 42 | 311.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 44 | 311.08 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 73 | 311.77 | temperature | 15 | 720 | > th | dose dependent | sin | 13 | NA |
| 93 | 312.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 112 | 312.34 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 168 | 313.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 175 | 313.25 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 2 | 7 |
| 219 | 313.81 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 12 |
| 235 | 314.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 242 | 314.13 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 249 | 314.17 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 8 |
| 253 | 314.21 | temperature | 25 | 270 | < th | dose dependent | sin | 10 | NA |
| 266 | 314.36 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 312 | 314.76 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 321 | 314.81 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 16 |
| 322 | 314.83 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 1 |
| 336 | 314.92 | temperature | 25 | 720 | > th | dose independent | sin | 12 | NA |
| 337 | 314.92 | temperature | 25 | 720 | < th | dose independent | sin | 13 | NA |
| 338 | 314.92 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 20 |
| 367 | 315.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 383 | 315.25 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 3 |
| 406 | 315.36 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 15 |
| 430 | 315.47 | temperature | 10 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 453 | 315.63 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 17 |
| 482 | 315.82 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 13 |
| 501 | 315.90 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 18 |
| 535 | 316.03 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 2 | 7 |
| 560 | 316.17 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 8 |
| 567 | 316.20 | temperature | 20 | 720 | < th | dose independent | sin | 16 | NA |
| 591 | 316.26 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 602 | 316.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 17 |
| 614 | 316.40 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 18 |
| 627 | 316.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 628 | 316.45 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 18 |
| 658 | 316.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 730 | 316.84 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 750 | 316.94 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 12 |
| 755 | 316.96 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 14 |
| 849 | 317.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 963 | 317.74 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 974 | 317.78 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 996 | 317.82 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |