Os04g0460900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0460900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.86 | 0.318 | 15.4 | -1.04 | 1.74 | 0.887 | -0.134 | -0.211 | -0.0225 | 22.4 | 21.8 | 2663 | -- | -- |
| 44.96 | 0.312 | 15.4 | -0.877 | 1.73 | 0.899 | -0.119 | -- | 0.0119 | 22.7 | 21.8 | 1765 | -- | -- |
| 44.35 | 0.31 | 15.4 | -0.898 | 1.79 | 0.855 | -- | -0.101 | -0.00173 | 22.6 | 22.02 | 1718 | -- | -- |
| 44.4 | 0.31 | 15.4 | -0.863 | 1.78 | 0.843 | -- | -- | 0.0122 | 22.6 | 22.03 | 1715 | -- | -- |
| 168.55 | 0.605 | 15.4 | -0.814 | -- | 1.52 | -- | -0.291 | -0.173 | -- | 25.1 | 819 | -- | -- |
| 69.71 | 0.391 | 15.4 | -0.522 | 1.79 | -- | -0.14 | -- | 0.288 | 22.5 | -- | -- | -- | -- |
| 69.79 | 0.391 | 15.4 | -0.517 | 1.79 | -- | -- | -- | 0.289 | 22.5 | -- | -- | -- | -- |
| 168.05 | 0.604 | 15.4 | -0.944 | -- | 1.52 | -- | -- | -0.253 | -- | 25.2 | 818 | -- | -- |
| 60.6 | 0.363 | 15.4 | -- | 1.75 | 0.63 | -- | -- | 0.128 | 22.4 | 22.3 | 1279 | -- | -- |
| 266.4 | 0.763 | 15.3 | -0.485 | -- | -- | -- | -- | 0.297 | -- | -- | -- | -- | -- |
| 76.83 | 0.41 | 15.3 | -- | 1.79 | -- | -- | -- | 0.346 | 22.5 | -- | -- | -- | -- |
| 190.19 | 0.642 | 15.4 | -- | -- | 1.34 | -- | -- | -0.0895 | -- | 25.11 | 800 | -- | -- |
| 272.59 | 0.771 | 15.3 | -- | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 45.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 3 | 45.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 11 | 45.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 24 | 45.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 61 | 45.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 72 | 46.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 154 | 46.37 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 286 | 46.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 498 | 47.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 512 | 47.76 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 539 | 47.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 548 | 47.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 558 | 47.86 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 578 | 47.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 610 | 47.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 620 | 48.02 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 629 | 48.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 682 | 48.17 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 730 | 48.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 749 | 48.29 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |