Os04g0459200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0459200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.57 | 0.255 | 11.5 | 0.356 | 0.53 | 0.513 | 0.258 | 0.162 | 0.488 | 22.7 | 20.64 | 1838 | -- | -- |
| 29.62 | 0.253 | 11.5 | 0.354 | 0.518 | 0.48 | 0.274 | -- | 0.477 | 22.6 | 20.9 | 1941 | -- | -- |
| 29.84 | 0.254 | 11.5 | 0.347 | 0.528 | 0.517 | -- | 0.178 | 0.487 | 22.7 | 20.62 | 1841 | -- | -- |
| 29.89 | 0.255 | 11.5 | 0.32 | 0.53 | 0.473 | -- | -- | 0.476 | 22.7 | 20.97 | 1853 | -- | -- |
| 45.46 | 0.314 | 11.4 | 0.309 | -- | 0.582 | -- | 0.173 | 0.459 | -- | 21 | 2267 | -- | -- |
| 35.1 | 0.278 | 11.4 | 0.544 | 0.541 | -- | 0.292 | -- | 0.601 | 22.6 | -- | -- | -- | -- |
| 35.45 | 0.279 | 11.4 | 0.532 | 0.539 | -- | -- | -- | 0.6 | 22.7 | -- | -- | -- | -- |
| 45.54 | 0.314 | 11.4 | 0.274 | -- | 0.565 | -- | -- | 0.452 | -- | 21 | 2267 | -- | -- |
| 31.58 | 0.262 | 11.5 | -- | 0.547 | 0.622 | -- | -- | 0.432 | 22.3 | 20.6 | 2724 | -- | -- |
| 53.37 | 0.341 | 11.4 | 0.542 | -- | -- | -- | -- | 0.602 | -- | -- | -- | -- | -- |
| 42.9 | 0.306 | 11.4 | -- | 0.543 | -- | -- | -- | 0.54 | 22.7 | -- | -- | -- | -- |
| 46.36 | 0.317 | 11.5 | -- | -- | 0.629 | -- | -- | 0.392 | -- | 21.29 | 924 | -- | -- |
| 61.13 | 0.365 | 11.4 | -- | -- | -- | -- | -- | 0.542 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 2 | 28.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 3 | 28.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 4 | 28.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 15 | 28.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 18 | 28.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 109 | 29.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 111 | 29.22 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 124 | 29.26 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 126 | 29.27 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 144 | 29.31 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 15 | 17 |
| 147 | 29.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 201 | 29.43 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 212 | 29.45 | atmosphere | 1010 | 90 | < th | dose dependent | sin | 12 | NA |
| 351 | 29.69 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 18 | 14 |
| 423 | 29.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 449 | 29.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 508 | 29.86 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 5 |
| 509 | 29.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 521 | 29.87 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 15 | 14 |
| 531 | 29.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 625 | 29.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 740 | 30.01 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 769 | 30.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 782 | 30.02 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 838 | 30.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 862 | 30.07 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 867 | 30.08 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 868 | 30.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 874 | 30.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 960 | 30.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |