Os04g0459000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MDR-like p-glycoprotein.
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Os04g0459000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MDR-like p-glycoprotein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 472.37 | 1.02 | 4.43 | -1.16 | 1.28 | -2.45 | -1.54 | -4.46 | 0.997 | 9.8 | 1.374 | 13208 | -- | -- |
| 477.08 | 1.02 | 4.35 | -0.424 | 0.8 | -2.26 | -1.89 | -- | 1.26 | 10.8 | 2.34 | 13740 | -- | -- |
| 479.54 | 1.02 | 4.41 | -1.17 | 1.27 | -2.4 | -- | -4.23 | 1.01 | 10.1 | 1.454 | 13346 | -- | -- |
| 493.78 | 1.03 | 4.35 | -0.427 | 0.856 | -2.34 | -- | -- | 1.25 | 10.4 | 2.35 | 13697 | -- | -- |
| 529.64 | 1.07 | 4.45 | -1.14 | -- | -2.38 | -- | -4.27 | 1.05 | -- | 1.57 | 18169 | -- | -- |
| 575.51 | 1.12 | 4.44 | -0.796 | 1.18 | -- | -1.8 | -- | 0.663 | 9.31 | -- | -- | -- | -- |
| 586.63 | 1.13 | 4.44 | -0.865 | 1.2 | -- | -- | -- | 0.658 | 8.99 | -- | -- | -- | -- |
| 522.55 | 1.06 | 4.25 | -0.267 | -- | -2.55 | -- | -- | 1.55 | -- | 2.148 | 16782 | -- | -- |
| 494.82 | 1.04 | 4.29 | -- | 0.804 | -2.62 | -- | -- | 1.37 | 10.6 | 1.918 | 13737 | -- | -- |
| 669.91 | 1.21 | 4.47 | -0.866 | -- | -- | -- | -- | 0.666 | -- | -- | -- | -- | -- |
| 606.35 | 1.15 | 4.42 | -- | 1.2 | -- | -- | -- | 0.754 | 9.05 | -- | -- | -- | -- |
| 522.72 | 1.06 | 4.26 | -- | -- | -2.54 | -- | -- | 1.59 | -- | 2.144 | 16802 | -- | -- |
| 689.71 | 1.23 | 4.45 | -- | -- | -- | -- | -- | 0.762 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 462.37 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 2 | 462.98 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 3 | 463.01 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 10 | 464.62 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 11 | 465.09 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 14 | 465.29 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 19 | 465.64 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 20 | 12 |
| 24 | 466.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 28 | 466.41 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 29 | 466.45 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 40 | 466.72 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 19 | 12 |
| 72 | 467.97 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 91 | 468.69 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 128 | 469.57 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 142 | 470.14 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 151 | 470.35 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 155 | 470.55 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 159 | 470.64 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 163 | 470.74 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 165 | 470.79 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 170 | 470.93 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 179 | 471.12 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 207 | 471.42 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 209 | 471.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 15 |
| 214 | 471.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 15 |
| 216 | 471.46 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 217 | 471.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 230 | 471.50 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 236 | 471.54 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 237 | 471.54 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 16 |
| 238 | 471.56 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 251 | 471.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 304 | 471.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 306 | 471.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 314 | 471.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 371 | 472.00 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 376 | 472.03 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 380 | 472.04 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 19 | 8 |
| 382 | 472.05 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 387 | 472.08 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 403 | 472.17 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 14 | NA |
| 409 | 472.19 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 14 | NA |
| 413 | 472.19 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 428 | 472.24 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 438 | 472.30 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 508 | 472.56 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 8 |
| 513 | 472.59 | humidity | 90.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 530 | 472.65 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 17 |
| 536 | 472.67 | humidity | 90.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 538 | 472.67 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 541 | 472.67 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 656 | 472.97 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 17 |
| 683 | 473.02 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 687 | 473.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 727 | 473.12 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 22 |
| 817 | 473.34 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 833 | 473.38 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 21 |
| 864 | 473.44 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 892 | 473.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 895 | 473.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 21 |
| 905 | 473.54 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 910 | 473.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 22 |
| 947 | 473.62 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 19 |
| 966 | 473.67 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 970 | 473.67 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 8 |