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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0458600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Non-cell-autonomous protein pathway2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.29 (0.0612) R2 : 0.566
β1 : 2.28 (0.227) R2dD : 0.113 R2D : 0.0302
β2 : 12.3 (0.602) R2dC : 6.48 R2C : -7.31
β3 : 17.6 (0.787) R2dE : 7.88 R2E : -6.18
β4 : 21.3 (1.98) R2dD*C : 1 R2D*C : -0.962
β5 : 26.3 (2.42) R2dD*E : 1.06 R2D*E : -1.03
γ1 : 0.783 (0.128) R2dN8 : 0.0507 R2N8 : -0.0308
σ : 1.1
deviance : 545.84
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_____
C
peak time of C : 16.3
E
wheather : radiation
threshold : 1.054
memory length : 726
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.02
open length of G : 19.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
545.84 1.1 4.29 2.28 12.3 17.6 21.3 26.3 0.783 16.3 1.054 726 6.02 19.4
817.65 1.33 4.14 4.4 11.3 16 6.53 -- 0.914 17.9 0.8581 753 4.23 21.9
845.87 1.36 4.11 1.54 1.4 0.786 -- 2.61 0.504 0.429 1.054 726 6.02 19.4
636.39 1.17 4.05 3.11 9.72 13.7 -- -- 1.47 17.4 2.477 759 5.7 21
776.09 1.3 4.09 1.82 -- 2.19 -- 2.62 0.546 -- 6.9 179 5.6 20.9
876.21 1.39 4.12 1.71 2.09 -- 2.66 -- 0.533 23.2 -- -- -- --
905.89 1.41 4.12 1.6 2.07 -- -- -- 0.52 23.4 -- -- -- --
801.48 1.32 4.01 1.83 -- 2.23 -- -- 0.625 -- 4.57 177 4.72 21.7
779.1 1.3 4.22 -- 7.05 9.42 -- -- 0.704 18.3 2.798 783 5.92 21.4
1174.97 1.6 4.07 1.66 -- -- -- -- 0.541 -- -- -- -- --
973.46 1.46 4.16 -- 2.09 -- -- -- 0.342 23.4 -- -- -- --
882.05 1.38 4.09 -- -- 2.16 -- -- 0.405 -- 4.649 169 4.64 22
1247.23 1.65 4.12 -- -- -- -- -- 0.358 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 559.57 radiation 1 720 < th dose dependent rect. 6 19
2 559.95 radiation 1 720 < th dose dependent rect. 6 21
7 569.22 radiation 1 720 < th dose dependent rect. 6 13
9 571.41 humidity 70 14400 < th dose independent rect. 18 14
11 572.96 humidity 70 14400 < th dose independent rect. 17 5
21 573.63 humidity 70 14400 < th dose independent rect. 18 1
25 575.84 humidity 70 14400 > th dose independent rect. 18 14
28 576.24 radiation 1 1440 < th dose dependent rect. 18 23
30 577.04 temperature 25 720 > th dose dependent rect. 14 19
31 577.06 temperature 25 720 > th dose dependent sin 17 NA
32 577.13 radiation 1 1440 < th dose dependent sin 0 NA
37 577.79 humidity 70 720 > th dose independent sin 14 NA
49 578.89 humidity 60 720 > th dose dependent sin 18 NA
56 579.79 radiation 1 720 < th dose independent rect. 6 19
58 579.99 humidity 60 720 > th dose dependent rect. 9 15
61 580.39 temperature 25 720 > th dose dependent rect. 12 12
65 580.84 radiation 1 1440 < th dose dependent rect. 7 23
67 580.98 temperature 25 720 > th dose dependent rect. 12 16
72 581.06 humidity 70 14400 > th dose independent rect. 18 6
91 581.65 humidity 70 14400 < th dose dependent rect. 16 3
96 581.91 radiation 1 720 < th dose independent rect. 6 21
108 582.79 humidity 50 720 > th dose dependent rect. 15 8
117 583.04 radiation 1 1440 < th dose dependent rect. 5 17
121 583.08 humidity 70 720 > th dose independent rect. 15 14
137 583.39 humidity 70 14400 < th dose dependent rect. 16 15
140 583.68 radiation 1 1440 < th dose dependent rect. 7 15
146 583.87 humidity 70 14400 < th dose dependent rect. 16 6
157 583.93 radiation 1 1440 < th dose dependent rect. 11 21
161 584.06 radiation 1 1440 < th dose dependent rect. 9 23
164 584.12 temperature 25 720 > th dose dependent rect. 10 18
166 584.17 humidity 70 720 > th dose independent rect. 15 8
171 584.29 temperature 25 720 > th dose dependent rect. 10 14
180 584.63 radiation 1 1440 < th dose dependent rect. 2 23
184 584.68 radiation 1 1440 < th dose dependent rect. 20 23
193 584.79 radiation 1 1440 < th dose dependent rect. 23 23
195 584.81 radiation 1 1440 < th dose dependent no NA NA
200 584.88 radiation 1 1440 < th dose dependent rect. 2 20
203 584.89 radiation 1 1440 < th dose dependent rect. 23 20
218 584.97 radiation 1 1440 < th dose dependent rect. 2 17
223 585.01 humidity 80 1440 < th dose independent rect. 7 13
276 586.63 humidity 70 720 > th dose independent rect. 15 12
301 588.01 humidity 80 1440 < th dose independent rect. 7 8
328 588.92 radiation 1 1440 < th dose dependent rect. 16 23
330 588.97 humidity 80 1440 > th dose independent rect. 7 14
354 590.24 humidity 80 1440 < th dose independent sin 1 NA
386 591.20 radiation 1 720 > th dose independent rect. 7 23
398 591.75 radiation 1 720 < th dose independent rect. 6 13
416 592.65 humidity 90 14400 < th dose dependent rect. 17 2
425 592.98 temperature 25 720 > th dose dependent rect. 2 23
430 593.04 temperature 25 720 > th dose dependent no NA NA
500 594.57 humidity 80 1440 > th dose independent sin 0 NA
514 595.14 humidity 50 14400 > th dose dependent rect. 18 1
538 595.89 temperature 25 720 > th dose dependent rect. 16 23
540 595.92 humidity 70 720 > th dose dependent rect. 6 17
563 596.41 humidity 70 720 > th dose independent rect. 14 20
564 596.44 radiation 1 1440 < th dose independent rect. 7 23
629 598.08 radiation 1 720 > th dose independent sin 22 NA
642 598.38 temperature 20 14400 > th dose dependent rect. 17 1
648 598.60 radiation 1 1440 < th dose dependent rect. 11 11
654 598.68 radiation 1 1440 < th dose dependent rect. 11 8
665 598.90 humidity 70 720 < th dose independent sin 14 NA
678 599.03 radiation 1 1440 < th dose independent rect. 11 21
740 599.85 humidity 80 1440 > th dose independent rect. 7 8
763 600.13 radiation 1 720 < th dose independent rect. 20 23
783 600.34 radiation 1 1440 < th dose independent rect. 16 23
803 600.52 radiation 1 720 < th dose independent sin 22 NA
832 600.67 temperature 25 1440 > th dose dependent rect. 16 1
916 601.15 radiation 1 1440 < th dose independent rect. 5 17