Os04g0457800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SERK1 (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0457800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to SERK1 (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.95 | 0.393 | 13.1 | 1.81 | 0.628 | -1.3 | 0.317 | 0.378 | 0.784 | 20.3 | 20.67 | 27 | -- | -- |
| 69.98 | 0.39 | 13.1 | 1.75 | 0.623 | -1.28 | 0.269 | -- | 0.763 | 20.2 | 20.8 | 18 | -- | -- |
| 70.21 | 0.39 | 13.1 | 1.81 | 0.619 | -1.3 | -- | 0.411 | 0.78 | 20.2 | 20.8 | 21 | -- | -- |
| 70.21 | 0.39 | 13.1 | 1.74 | 0.62 | -1.27 | -- | -- | 0.765 | 20.3 | 20.8 | 18 | -- | -- |
| 90.5 | 0.446 | 13.1 | 1.78 | -- | -1.3 | -- | 0.277 | 0.773 | -- | 20.55 | 11 | -- | -- |
| 94.1 | 0.455 | 13.2 | 1.48 | 0.755 | -- | 0.289 | -- | 0.549 | 22.9 | -- | -- | -- | -- |
| 94.45 | 0.455 | 13.2 | 1.47 | 0.753 | -- | -- | -- | 0.548 | 22.9 | -- | -- | -- | -- |
| 90.39 | 0.443 | 13.1 | 1.73 | -- | -1.28 | -- | -- | 0.751 | -- | 20.38 | 4 | -- | -- |
| 144.15 | 0.562 | 13.2 | -- | 0.637 | -0.673 | -- | -- | 0.482 | 21.8 | 20.8 | 18 | -- | -- |
| 129.67 | 0.532 | 13.2 | 1.49 | -- | -- | -- | -- | 0.553 | -- | -- | -- | -- | -- |
| 151.63 | 0.576 | 13.2 | -- | 0.766 | -- | -- | -- | 0.384 | 23 | -- | -- | -- | -- |
| 166.75 | 0.603 | 13.2 | -- | -- | -0.941 | -- | -- | 0.516 | -- | 20.9 | 5 | -- | -- |
| 188.16 | 0.64 | 13.2 | -- | -- | -- | -- | -- | 0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.18 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 5 | 68.60 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 6 | 68.76 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 7 | 68.77 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 16 | 69.06 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 22 |
| 19 | 69.09 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 41 | 69.43 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 52 | 69.49 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 53 | 69.50 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 63 | 69.56 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 64 | 69.57 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 90 | 69.78 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 92 | 69.80 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 109 | 69.86 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 22 |
| 165 | 70.14 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 167 | 70.17 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 169 | 70.19 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 178 | 70.24 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 188 | 70.30 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 198 | 70.35 | temperature | 20.0 | 30 | > th | dose dependent | no | NA | NA |
| 226 | 70.48 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 246 | 70.57 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 280 | 70.74 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 292 | 70.78 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 328 | 70.91 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 330 | 70.93 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 331 | 70.93 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 336 | 70.95 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 17 |
| 419 | 71.16 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 430 | 71.20 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 457 | 71.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 458 | 71.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 479 | 71.31 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 492 | 71.35 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 495 | 71.36 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 548 | 71.50 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 555 | 71.51 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 606 | 71.63 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 608 | 71.63 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 609 | 71.63 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 616 | 71.65 | temperature | 30.0 | 30 | < th | dose dependent | no | NA | NA |
| 643 | 71.72 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 651 | 71.74 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 661 | 71.76 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 695 | 71.82 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 704 | 71.83 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 736 | 71.90 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 810 | 72.03 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 849 | 72.08 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 880 | 72.12 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 945 | 72.23 | temperature | 20.0 | 720 | > th | dose dependent | no | NA | NA |
| 972 | 72.27 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 990 | 72.28 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 991 | 72.29 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 13 | 9 |