Os04g0457400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0457400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.54 | 0.551 | 5.93 | 0.435 | 1.73 | 1.72 | 0.415 | -0.783 | 0.224 | 8.77 | 1.02 | 42 | -- | -- |
| 139.19 | 0.549 | 5.92 | 0.491 | 1.78 | 1.69 | -0.338 | -- | 0.242 | 8.75 | 1.01 | 44 | -- | -- |
| 137.78 | 0.547 | 5.93 | 0.456 | 1.75 | 1.71 | -- | -0.546 | 0.225 | 8.77 | 1.018 | 44 | -- | -- |
| 139.58 | 0.55 | 5.93 | 0.461 | 1.75 | 1.72 | -- | -- | 0.226 | 8.75 | 1.02 | 44 | -- | -- |
| 230.33 | 0.707 | 5.99 | 0.441 | -- | 2.49 | -- | -0.672 | 0.223 | -- | 1.02 | 26 | -- | -- |
| 197.78 | 0.659 | 5.87 | 0.554 | 3.43 | -- | -0.583 | -- | 0.295 | 10.5 | -- | -- | -- | -- |
| 199.17 | 0.661 | 5.87 | 0.531 | 3.44 | -- | -- | -- | 0.293 | 10.5 | -- | -- | -- | -- |
| 233.97 | 0.712 | 5.98 | 0.446 | -- | 2.51 | -- | -- | 0.226 | -- | 1.016 | 26 | -- | -- |
| 145.22 | 0.561 | 5.94 | -- | 1.73 | 1.75 | -- | -- | 0.184 | 8.66 | 1.019 | 44 | -- | -- |
| 923.34 | 1.42 | 5.96 | 0.471 | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
| 206.6 | 0.672 | 5.89 | -- | 3.43 | -- | -- | -- | 0.234 | 10.5 | -- | -- | -- | -- |
| 239.17 | 0.72 | 5.99 | -- | -- | 2.51 | -- | -- | 0.18 | -- | 0.9501 | 26 | -- | -- |
| 929.19 | 1.42 | 5.98 | -- | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.97 | radiation | 1.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 2 | 139.24 | radiation | 1.0 | 30 | > th | dose independent | no | NA | NA |
| 3 | 139.24 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 58 | 139.31 | radiation | 1.0 | 30 | < th | dose independent | no | NA | NA |
| 59 | 139.31 | radiation | 1.0 | 30 | < th | dose independent | rect. | 11 | 21 |
| 65 | 139.31 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 66 | 139.31 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 67 | 139.34 | radiation | 1.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 68 | 139.51 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 19 |
| 76 | 139.79 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 21 |
| 80 | 139.98 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 17 |
| 111 | 142.14 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 15 |
| 113 | 142.25 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 199 | 146.51 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 209 | 146.88 | radiation | 1.0 | 30 | < th | dose dependent | no | NA | NA |
| 210 | 146.88 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 216 | 146.88 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 217 | 146.88 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 219 | 146.91 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 225 | 147.08 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 233 | 147.13 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 247 | 147.41 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 21 |
| 253 | 147.59 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 299 | 148.59 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 15 |
| 301 | 148.72 | radiation | 10.0 | 30 | < th | dose dependent | sin | 12 | NA |
| 330 | 149.26 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 341 | 149.40 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 12 |
| 377 | 149.55 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 401 | 149.61 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 468 | 150.71 | radiation | 1.0 | 30 | > th | dose independent | sin | 12 | NA |
| 527 | 152.05 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 15 | 13 |
| 549 | 152.44 | radiation | 1.0 | 90 | > th | dose independent | rect. | 11 | 23 |
| 584 | 152.97 | radiation | 1.0 | 30 | < th | dose independent | sin | 12 | NA |
| 609 | 153.27 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 670 | 154.52 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 671 | 154.53 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 714 | 155.74 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 20 |
| 738 | 156.29 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 739 | 156.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 13 |
| 740 | 156.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 741 | 156.33 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 768 | 157.05 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 13 | 12 |
| 779 | 157.29 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 785 | 157.39 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 12 |
| 799 | 157.61 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 12 |
| 818 | 157.93 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 12 | 19 |
| 819 | 157.93 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 820 | 157.94 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 20 |
| 822 | 157.94 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 829 | 158.06 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 833 | 158.11 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 840 | 158.28 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 875 | 159.06 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 10 |
| 891 | 159.31 | radiation | 1.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 897 | 159.36 | temperature | 25.0 | 10 | > th | dose independent | rect. | 12 | 21 |
| 898 | 159.36 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 900 | 159.36 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 920 | 159.76 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 21 |
| 921 | 159.76 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 932 | 160.10 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 944 | 160.33 | radiation | 1.0 | 30 | > th | dose dependent | sin | 12 | NA |
| 959 | 160.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 13 |
| 966 | 160.51 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 972 | 160.58 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 12 |
| 976 | 160.69 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 5 |