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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0457300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0148) R2 : 0.0433
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.142 (0.0312) R2dN8 : 0.0559 R2N8 : 0.0433
σ : 0.279
deviance : 35.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.96 0.27 2.85 0.802 0.117 -6.02 -0.11 37.1 0.14 9.27 999.2 138 -- --
34.3 0.275 3.01 -0.101 0.12 0.2 -0.0974 -- 0.136 9.43 999.2 138 -- --
32.82 0.267 2.86 0.724 0.119 -6.17 -- 38.2 0.142 9.42 998.8 154 -- --
34.19 0.272 3.01 -0.113 0.12 0.222 -- -- 0.138 9.53 1001 159 -- --
33.34 0.269 2.77 1.33 -- -12.1 -- 73.5 0.139 -- 998.4 130 -- --
34.59 0.276 3.01 -0.0878 0.119 -- -0.0975 -- 0.131 9.47 -- -- -- --
34.62 0.276 3.01 -0.0912 0.119 -- -- -- 0.131 9.61 -- -- -- --
35.04 0.276 3.01 -0.112 -- 0.213 -- -- 0.139 -- 1001 145 -- --
34.5 0.274 3 -- 0.121 0.193 -- -- 0.149 9.62 1000 159 -- --
35.46 0.278 3.01 -0.0922 -- -- -- -- 0.131 -- -- -- -- --
34.84 0.276 3.01 -- 0.12 -- -- -- 0.141 9.67 -- -- -- --
35.36 0.277 3.01 -- -- 0.189 -- -- 0.15 -- 1001 145 -- --
35.69 0.279 3.01 -- -- -- -- -- 0.142 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.40 wind 1.0 90 < th dose independent rect. 6 1
2 28.68 wind 1.0 90 < th dose dependent rect. 6 1
5 29.17 temperature 25.0 30 > th dose dependent rect. 7 1
6 29.35 wind 1.0 90 < th dose independent rect. 6 5
11 29.69 wind 1.0 90 < th dose independent rect. 6 9
20 30.34 atmosphere 1000.0 30 < th dose independent rect. 14 6
24 30.34 atmosphere 1000.0 30 < th dose dependent rect. 14 6
54 30.41 atmosphere 1000.0 10 < th dose independent rect. 15 3
73 30.45 atmosphere 1000.0 90 < th dose independent rect. 14 1
76 30.45 atmosphere 1000.0 90 < th dose dependent rect. 14 1
117 30.92 radiation 30.0 10 > th dose dependent rect. 8 1
126 31.13 wind 3.0 10 < th dose dependent rect. 7 1
134 31.30 radiation 30.0 10 > th dose independent rect. 8 1
139 31.41 temperature 25.0 30 > th dose independent rect. 7 1
155 31.61 radiation 10.0 270 > th dose independent rect. 6 1
179 31.77 wind 1.0 90 < th dose independent rect. 14 1
181 31.78 radiation 20.0 10 < th dose independent rect. 7 1
184 31.79 atmosphere 1000.0 90 < th dose dependent rect. 14 13
188 31.88 radiation 20.0 10 < th dose dependent rect. 7 1
226 32.10 atmosphere 1000.0 90 < th dose dependent rect. 14 17
268 32.23 atmosphere 1000.0 90 < th dose dependent sin 18 NA
292 32.26 atmosphere 1015.0 30 < th dose independent rect. 8 23
310 32.28 wind 3.0 10 < th dose dependent rect. 16 1
337 32.33 wind 1.0 30 < th dose independent rect. 10 1
338 32.33 temperature 10.0 1440 > th dose independent rect. 11 1
342 32.33 atmosphere 995.0 1440 > th dose independent rect. 11 1
345 32.33 precipitation 0.1 1440 < th dose independent rect. 11 1
348 32.33 temperature 10.0 1440 > th dose independent rect. 12 23
351 32.33 wind 1.0 30 < th dose dependent rect. 10 1
353 32.33 precipitation 0.1 1440 < th dose dependent rect. 11 1
399 32.39 wind 1.0 90 < th dose dependent rect. 14 1
405 32.40 temperature 25.0 30 > th dose dependent rect. 10 1
420 32.43 humidity 70.0 30 < th dose independent rect. 10 1
431 32.47 atmosphere 1010.0 30 < th dose independent rect. 10 1
436 32.48 temperature 25.0 30 > th dose independent rect. 10 1
437 32.48 radiation 40.0 30 < th dose independent rect. 10 1
448 32.50 atmosphere 1005.0 30 > th dose independent rect. 10 1
455 32.51 wind 1.0 270 < th dose independent rect. 3 6
473 32.54 humidity 80.0 10 > th dose independent rect. 7 1
474 32.54 radiation 20.0 30 > th dose independent rect. 10 1
477 32.54 atmosphere 1000.0 30 > th dose dependent rect. 10 1
479 32.55 atmosphere 1000.0 30 > th dose independent rect. 8 23
488 32.56 humidity 60.0 30 > th dose independent rect. 10 1
493 32.56 humidity 80.0 30 < th dose dependent rect. 10 1
496 32.57 wind 1.0 30 > th dose independent rect. 7 1
500 32.57 radiation 40.0 30 < th dose dependent rect. 10 1
512 32.59 temperature 30.0 30 < th dose independent rect. 10 1
522 32.60 temperature 10.0 30 > th dose independent rect. 10 1
525 32.60 humidity 90.0 30 < th dose independent rect. 10 1
528 32.60 radiation 1.0 10 > th dose independent rect. 7 1
529 32.60 radiation 1.0 30 > th dose independent rect. 10 1
530 32.60 radiation 40.0 10 < th dose independent rect. 7 1
531 32.60 precipitation 0.1 30 < th dose independent rect. 10 1
533 32.60 temperature 10.0 30 > th dose independent rect. 11 23
536 32.60 precipitation 0.1 30 < th dose dependent rect. 10 1
540 32.61 wind 1.0 30 > th dose independent rect. 10 1
586 32.66 atmosphere 1000.0 30 > th dose independent rect. 7 1
600 32.67 wind 9.0 30 < th dose independent rect. 7 1
601 32.67 wind 9.0 1440 < th dose independent rect. 8 1
604 32.67 temperature 10.0 30 > th dose independent rect. 7 1
606 32.67 temperature 10.0 1440 > th dose independent rect. 8 1
611 32.67 temperature 30.0 30 < th dose independent rect. 7 1
612 32.67 humidity 50.0 30 > th dose independent rect. 7 1
614 32.67 humidity 50.0 1440 > th dose independent rect. 8 1
617 32.67 atmosphere 995.0 1440 > th dose independent rect. 8 1
620 32.67 atmosphere 1015.0 30 < th dose independent rect. 7 1
621 32.67 atmosphere 1015.0 1440 < th dose independent rect. 8 1
622 32.67 precipitation 0.1 10 < th dose independent rect. 7 1
624 32.67 temperature 10.0 30 > th dose independent rect. 8 23
625 32.67 temperature 10.0 1440 > th dose independent rect. 9 23
629 32.67 precipitation 0.1 10 < th dose dependent rect. 7 1
662 32.71 wind 1.0 270 < th dose independent rect. 3 11
666 32.72 precipitation 0.1 1440 < th dose independent rect. 8 1
669 32.72 radiation 1.0 30 > th dose dependent rect. 10 1
670 32.72 precipitation 0.1 1440 < th dose dependent rect. 8 1
678 32.73 humidity 50.0 30 > th dose dependent rect. 10 1
693 32.75 atmosphere 1000.0 10 < th dose independent rect. 14 13
702 32.75 precipitation 0.1 30 < th dose independent rect. 8 23
704 32.75 precipitation 0.1 30 < th dose dependent rect. 8 23
721 32.76 atmosphere 1015.0 30 < th dose dependent rect. 7 1
740 32.78 atmosphere 1015.0 30 < th dose dependent rect. 10 1
753 32.80 wind 9.0 30 < th dose independent rect. 8 23
766 32.81 wind 3.0 10 < th dose dependent rect. 7 4
776 32.82 humidity 50.0 10 > th dose dependent rect. 7 1
789 32.84 humidity 90.0 30 < th dose independent rect. 7 1
811 32.86 atmosphere 1000.0 10 < th dose independent rect. 14 18
870 32.91 atmosphere 995.0 10 > th dose dependent rect. 7 1
881 32.92 wind 1.0 270 < th dose dependent rect. 3 6
888 32.93 atmosphere 1000.0 30 < th dose independent sin 18 NA
906 32.94 wind 1.0 30 > th dose dependent rect. 10 1
912 32.95 wind 3.0 10 < th dose independent rect. 16 1
945 32.98 wind 1.0 90 < th dose independent sin 23 NA
983 33.01 wind 1.0 270 < th dose independent sin 1 NA