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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0457100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0455) R2 : 8.88e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00609 (0.0958) R2dN8 : 1.15e-05 R2N8 : 8.88e-06
σ : 0.857
deviance : 336.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
319.71 0.84 2.88 0.778 0.0715 -0.849 0.508 1.13 0.261 22 11.92 2439 -- --
320.95 0.834 2.91 0.596 0.00602 -0.913 0.613 -- 0.192 22.2 8.316 4304 -- --
320.49 0.834 2.87 0.796 0.103 -0.843 -- 1.3 0.27 19.4 10.55 2380 -- --
322.05 0.836 2.91 0.558 0.0743 -0.868 -- -- 0.184 16.3 7.701 4351 -- --
320.97 0.834 2.87 0.789 -- -0.823 -- 1.28 0.265 -- 9.44 2454 -- --
334.67 0.858 2.95 0.174 0.0809 -- -0.545 -- 0.0153 13.2 -- -- -- --
335.65 0.858 2.95 0.156 0.109 -- -- -- 0.0136 15.7 -- -- -- --
322.32 0.836 2.91 0.555 -- -0.873 -- -- 0.184 -- 9.704 4306 -- --
327.06 0.842 2.93 -- 0.0636 -0.689 -- -- 0.103 15.2 9.068 1417 -- --
336.31 0.857 2.95 0.151 -- -- -- -- 0.0107 -- -- -- -- --
336.29 0.858 2.96 -- 0.106 -- -- -- -0.00375 15.8 -- -- -- --
327.19 0.842 2.93 -- -- -0.704 -- -- 0.0976 -- 10.51 1309 -- --
336.91 0.857 2.96 -- -- -- -- -- -0.00609 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 307.61 precipitation 0.1 1440 > th dose independent rect. 22 1
2 307.61 precipitation 0.1 1440 > th dose dependent rect. 22 1
3 308.49 precipitation 0.1 90 > th dose independent rect. 23 2
4 308.49 wind 5.0 10 > th dose independent rect. 24 6
8 308.49 precipitation 0.1 90 > th dose dependent rect. 23 2
9 308.50 wind 5.0 30 > th dose dependent rect. 24 6
13 308.53 wind 5.0 10 > th dose independent rect. 24 4
17 308.53 wind 5.0 10 > th dose dependent rect. 24 4
27 308.59 wind 5.0 10 > th dose independent rect. 24 2
31 308.59 wind 5.0 10 > th dose dependent rect. 24 2
57 310.65 wind 5.0 10 > th dose independent rect. 22 3
60 310.73 wind 5.0 10 > th dose dependent rect. 22 8
62 310.74 wind 5.0 10 > th dose dependent rect. 22 6
75 311.36 wind 1.0 10 < th dose dependent rect. 1 1
78 311.45 wind 5.0 10 > th dose independent rect. 22 8
162 314.61 wind 9.0 43200 < th dose independent rect. 20 13
166 314.78 wind 9.0 43200 > th dose independent rect. 20 13
174 315.01 wind 9.0 43200 > th dose independent rect. 17 18
176 315.05 wind 9.0 43200 < th dose independent rect. 17 18
178 315.17 wind 9.0 43200 > th dose dependent rect. 20 12
182 315.27 wind 9.0 43200 > th dose dependent rect. 17 15
200 315.73 wind 9.0 43200 > th dose independent sin 10 NA
211 315.84 wind 9.0 43200 < th dose independent sin 10 NA
218 315.91 wind 9.0 43200 > th dose dependent sin 11 NA
224 315.96 wind 5.0 43200 > th dose dependent rect. 6 3
228 316.01 wind 7.0 43200 < th dose independent rect. 6 3
232 316.08 wind 9.0 43200 > th dose independent rect. 20 4
234 316.10 atmosphere 995.0 43200 < th dose independent rect. 5 10
237 316.17 wind 1.0 10 < th dose independent rect. 1 1
238 316.17 humidity 60.0 4320 < th dose dependent rect. 18 2
251 316.18 wind 7.0 43200 > th dose independent rect. 6 3
262 316.19 wind 9.0 43200 < th dose independent rect. 20 4
263 316.19 wind 9.0 43200 > th dose independent rect. 20 7
276 316.35 atmosphere 995.0 43200 < th dose dependent sin 20 NA
281 316.39 atmosphere 995.0 43200 < th dose dependent rect. 8 16
282 316.40 atmosphere 995.0 43200 > th dose independent rect. 5 10
283 316.40 atmosphere 995.0 43200 < th dose dependent rect. 5 19
284 316.41 humidity 50.0 4320 > th dose independent rect. 16 11
290 316.44 wind 7.0 43200 < th dose independent rect. 6 1
292 316.45 humidity 50.0 4320 > th dose independent rect. 16 6
298 316.48 humidity 50.0 4320 > th dose independent rect. 16 14
304 316.51 humidity 50.0 4320 > th dose independent rect. 16 17
306 316.52 humidity 50.0 4320 > th dose independent rect. 16 4
316 316.57 wind 9.0 43200 < th dose independent rect. 20 7
327 316.63 atmosphere 995.0 43200 < th dose dependent rect. 3 16
343 316.72 wind 9.0 43200 > th dose dependent rect. 20 4
344 316.73 humidity 60.0 4320 < th dose independent rect. 18 2
367 316.78 wind 9.0 43200 > th dose dependent rect. 20 7
373 316.81 wind 9.0 43200 > th dose dependent rect. 20 9
381 316.85 temperature 10.0 10 > th dose dependent rect. 17 23
401 317.00 atmosphere 995.0 43200 < th dose independent sin 2 NA
413 317.08 wind 7.0 43200 > th dose independent rect. 8 1
417 317.11 atmosphere 995.0 43200 < th dose dependent rect. 11 12
418 317.13 wind 7.0 43200 > th dose independent rect. 6 1
429 317.23 temperature 30.0 10 < th dose dependent rect. 9 15
437 317.28 atmosphere 995.0 43200 > th dose independent sin 2 NA
447 317.36 atmosphere 995.0 43200 < th dose dependent sin 0 NA
459 317.40 temperature 30.0 10 < th dose dependent rect. 9 18
474 317.49 atmosphere 995.0 43200 > th dose independent rect. 6 7
488 317.63 atmosphere 1000.0 43200 < th dose dependent rect. 9 1
496 317.70 humidity 70.0 1440 > th dose independent rect. 18 9
497 317.70 humidity 70.0 1440 > th dose independent rect. 18 12
499 317.72 humidity 70.0 1440 > th dose independent rect. 18 2
500 317.72 humidity 70.0 1440 > th dose independent rect. 18 4
504 317.73 atmosphere 995.0 43200 < th dose independent rect. 7 8
507 317.74 precipitation 0.1 14400 < th dose independent rect. 21 3
509 317.74 atmosphere 995.0 43200 < th dose independent rect. 7 17
512 317.74 precipitation 0.1 14400 < th dose dependent rect. 21 3
522 317.78 humidity 70.0 1440 > th dose independent rect. 18 7
537 317.82 humidity 50.0 14400 > th dose dependent rect. 22 4
545 317.86 humidity 70.0 14400 > th dose dependent rect. 21 6
559 317.90 precipitation 0.1 14400 > th dose independent rect. 21 3
563 317.91 humidity 50.0 14400 > th dose dependent rect. 21 6
615 318.04 atmosphere 995.0 43200 > th dose independent rect. 7 17
618 318.05 radiation 10.0 14400 < th dose independent rect. 17 10
619 318.05 radiation 10.0 14400 < th dose independent rect. 17 12
623 318.05 temperature 25.0 4320 < th dose dependent rect. 13 1
634 318.08 humidity 60.0 14400 > th dose independent rect. 18 14
636 318.09 radiation 10.0 14400 < th dose independent rect. 17 2
637 318.09 radiation 10.0 14400 < th dose independent rect. 17 4
640 318.09 radiation 10.0 14400 < th dose independent rect. 17 8
704 318.17 temperature 30.0 270 < th dose dependent rect. 5 19
719 318.20 radiation 30.0 1440 > th dose independent rect. 15 17
748 318.25 humidity 80.0 14400 > th dose dependent rect. 22 1
754 318.27 wind 7.0 43200 > th dose independent rect. 23 1
764 318.28 radiation 30.0 1440 > th dose dependent rect. 15 17
777 318.33 wind 9.0 43200 < th dose independent rect. 22 2
786 318.34 temperature 10.0 4320 > th dose dependent rect. 13 1
788 318.35 atmosphere 1010.0 10 < th dose independent rect. 11 11
796 318.37 atmosphere 995.0 43200 < th dose dependent rect. 8 11
800 318.38 wind 9.0 43200 > th dose dependent rect. 17 7
812 318.39 wind 7.0 43200 > th dose dependent rect. 23 1
850 318.47 temperature 30.0 1440 < th dose dependent rect. 24 1
871 318.51 humidity 80.0 43200 > th dose independent rect. 18 2
895 318.54 atmosphere 995.0 43200 > th dose independent rect. 11 2
928 318.61 precipitation 0.1 14400 > th dose dependent rect. 21 3
980 318.69 atmosphere 1010.0 90 < th dose independent rect. 11 11
1000 318.71 temperature 15.0 1440 > th dose dependent rect. 24 12