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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0456100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.91 (0.0352) R2 : 0.00694
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.132 (0.074) R2dN8 : 0.00896 R2N8 : 0.00694
σ : 0.662
deviance : 201.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
179.44 0.629 3.87 0.586 0.436 0.488 0.243 -1.41 -0.0601 1.74 5.2 4719 -- --
180.16 0.625 3.9 0.597 0.451 0.614 0.279 -- -0.0817 1.68 6.098 4663 -- --
179.67 0.624 3.87 0.578 0.436 0.483 -- -1.44 -0.0607 1.78 5.232 4717 -- --
180.38 0.626 3.9 0.574 0.459 0.601 -- -- -0.0854 1.6 6.347 4649 -- --
188.37 0.639 3.86 0.567 -- 0.53 -- -1.24 -0.0158 -- 4.9 3864 -- --
186.94 0.641 3.91 0.368 0.408 -- 0.248 -- -0.0978 1.42 -- -- -- --
187.19 0.641 3.91 0.359 0.408 -- -- -- -0.0992 1.42 -- -- -- --
189.23 0.641 3.87 0.614 -- 0.74 -- -- 0.0072 -- 5.597 3764 -- --
187.84 0.638 3.91 -- 0.438 0.337 -- -- -0.142 1.5 6.4 4665 -- --
197.44 0.657 3.9 0.375 -- -- -- -- -0.0905 -- -- -- -- --
190.59 0.646 3.92 -- 0.415 -- -- -- -0.139 1.45 -- -- -- --
197.59 0.655 3.89 -- -- 0.435 -- -- -0.066 -- 6.2 3768 -- --
201.15 0.662 3.91 -- -- -- -- -- -0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.21 wind 1.0 720 < th dose independent rect. 22 1
2 174.37 wind 1.0 720 < th dose dependent rect. 22 1
7 178.30 wind 1.0 30 < th dose dependent rect. 9 2
9 178.46 wind 1.0 30 < th dose dependent rect. 22 2
10 178.48 temperature 25.0 10 > th dose dependent rect. 9 1
14 178.80 humidity 60.0 90 > th dose independent rect. 12 23
16 178.90 humidity 90.0 10 < th dose dependent rect. 11 8
22 179.25 wind 1.0 720 < th dose dependent rect. 15 9
23 179.30 temperature 25.0 90 > th dose independent rect. 8 2
25 179.40 temperature 25.0 10 > th dose independent rect. 9 1
36 179.65 wind 5.0 4320 > th dose independent rect. 14 19
38 179.68 wind 5.0 4320 < th dose independent rect. 14 19
39 179.70 wind 3.0 4320 < th dose dependent rect. 18 1
41 179.73 wind 9.0 4320 < th dose independent rect. 1 1
43 179.74 wind 7.0 4320 > th dose dependent rect. 7 4
45 179.75 wind 1.0 30 < th dose dependent rect. 15 9
56 179.84 humidity 90.0 10 < th dose dependent rect. 11 21
57 179.87 humidity 90.0 10 < th dose dependent rect. 11 16
63 179.93 wind 7.0 4320 > th dose independent rect. 6 7
69 179.95 wind 7.0 4320 < th dose independent rect. 6 7
72 179.97 humidity 80.0 30 < th dose independent rect. 11 8
81 180.00 wind 1.0 30 < th dose dependent rect. 17 7
85 180.03 wind 1.0 1440 > th dose independent rect. 22 1
108 180.12 humidity 70.0 1440 < th dose independent rect. 10 2
126 180.19 temperature 25.0 30 > th dose independent rect. 21 9
132 180.21 radiation 30.0 720 < th dose dependent rect. 22 9
147 180.26 humidity 90.0 10 < th dose dependent rect. 11 3
152 180.28 wind 7.0 4320 < th dose independent rect. 1 12
158 180.29 wind 7.0 4320 > th dose independent rect. 11 1
164 180.30 radiation 40.0 720 < th dose independent rect. 13 11
171 180.32 wind 7.0 4320 < th dose independent rect. 11 1
174 180.32 wind 7.0 4320 < th dose independent rect. 22 15
175 180.33 precipitation 0.1 720 < th dose independent rect. 24 8
180 180.33 precipitation 0.1 720 < th dose dependent rect. 24 8
181 180.34 wind 7.0 4320 > th dose independent rect. 1 12
185 180.36 wind 7.0 4320 > th dose independent rect. 22 15
196 180.38 humidity 60.0 90 > th dose independent rect. 22 23
204 180.40 wind 5.0 4320 > th dose independent sin 13 NA
212 180.40 wind 3.0 4320 > th dose dependent rect. 15 18
213 180.40 wind 5.0 4320 > th dose dependent rect. 15 20
230 180.44 wind 5.0 4320 < th dose independent sin 13 NA
241 180.46 radiation 10.0 720 < th dose independent rect. 22 9
256 180.49 humidity 70.0 720 > th dose dependent rect. 22 2
259 180.50 temperature 30.0 30 < th dose independent rect. 12 23
268 180.53 humidity 70.0 1440 > th dose independent rect. 10 2
272 180.53 humidity 90.0 10 < th dose dependent rect. 11 12
278 180.55 wind 5.0 4320 > th dose dependent rect. 1 12
279 180.56 temperature 25.0 270 > th dose independent rect. 21 1
285 180.56 wind 5.0 4320 > th dose independent rect. 22 22
306 180.59 wind 5.0 4320 > th dose independent rect. 19 23
310 180.60 wind 5.0 4320 > th dose independent no NA NA
319 180.61 wind 5.0 4320 < th dose independent rect. 22 22
321 180.61 wind 5.0 4320 < th dose independent rect. 19 23
324 180.61 wind 3.0 4320 > th dose dependent rect. 15 14
332 180.63 temperature 25.0 90 > th dose independent rect. 21 4
339 180.64 wind 5.0 4320 < th dose independent no NA NA
342 180.64 temperature 25.0 30 > th dose independent rect. 21 6
347 180.64 wind 5.0 4320 > th dose independent rect. 17 23
368 180.66 wind 5.0 4320 > th dose independent rect. 6 23
402 180.68 wind 5.0 4320 < th dose independent rect. 17 23
407 180.68 wind 7.0 4320 > th dose dependent rect. 22 15
414 180.69 wind 5.0 4320 > th dose independent rect. 4 23
422 180.70 wind 5.0 4320 < th dose independent rect. 6 23
437 180.71 humidity 60.0 1440 > th dose dependent rect. 10 1
468 180.74 wind 5.0 4320 < th dose independent rect. 4 23
496 180.77 wind 9.0 4320 < th dose independent rect. 21 3
505 180.78 wind 7.0 4320 < th dose independent sin 4 NA
509 180.78 wind 9.0 720 < th dose independent rect. 24 8
510 180.78 temperature 10.0 720 > th dose independent rect. 24 8
511 180.78 temperature 30.0 720 < th dose independent rect. 24 8
512 180.78 humidity 50.0 720 > th dose independent rect. 24 8
514 180.78 atmosphere 995.0 720 > th dose independent rect. 24 8
516 180.78 temperature 10.0 720 > th dose independent rect. 8 16
543 180.81 wind 1.0 4320 > th dose independent rect. 17 1
552 180.81 wind 5.0 4320 > th dose dependent sin 4 NA
584 180.83 humidity 90.0 30 < th dose dependent rect. 21 22
597 180.85 wind 7.0 4320 > th dose independent sin 4 NA
599 180.85 wind 5.0 4320 < th dose independent rect. 5 1
621 180.86 humidity 60.0 90 > th dose independent rect. 1 23
648 180.88 temperature 25.0 30 > th dose dependent rect. 21 9
663 180.89 humidity 90.0 720 < th dose dependent rect. 11 1
666 180.89 wind 5.0 4320 > th dose dependent rect. 22 22
667 180.90 temperature 10.0 720 > th dose independent rect. 12 8
668 180.90 atmosphere 1015.0 720 < th dose independent rect. 12 8
672 180.90 temperature 10.0 720 > th dose independent rect. 20 16
673 180.90 atmosphere 995.0 720 > th dose independent rect. 20 16
683 180.90 wind 5.0 4320 > th dose dependent rect. 1 19
692 180.91 wind 3.0 4320 > th dose dependent sin 13 NA
718 180.94 humidity 70.0 1440 < th dose independent rect. 19 17
725 180.94 humidity 50.0 10 > th dose dependent rect. 23 22
821 181.01 temperature 10.0 30 > th dose dependent rect. 11 14
838 181.03 humidity 80.0 90 < th dose independent rect. 8 2
839 181.03 radiation 20.0 10 > th dose independent rect. 11 3
866 181.04 wind 5.0 4320 > th dose dependent rect. 1 22
872 181.05 wind 1.0 720 < th dose independent rect. 15 9
881 181.05 wind 5.0 4320 > th dose dependent no NA NA
886 181.05 wind 1.0 30 < th dose dependent rect. 9 16
915 181.07 humidity 70.0 30 < th dose independent rect. 11 3
916 181.07 wind 5.0 4320 < th dose independent rect. 4 4
919 181.07 temperature 25.0 90 > th dose independent rect. 1 9
939 181.08 temperature 25.0 270 > th dose dependent rect. 21 1
940 181.08 temperature 25.0 90 > th dose dependent rect. 1 9
944 181.08 wind 5.0 4320 > th dose dependent rect. 6 23
954 181.09 humidity 90.0 1440 < th dose independent rect. 7 7
974 181.09 wind 5.0 4320 > th dose dependent rect. 4 23
1000 181.11 radiation 10.0 90 > th dose independent rect. 10 22