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Os04g0455700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.63 (0.0363) R2 : 0.344
β1 : -1.58 (0.148) R2dD : 0.224 R2D : -0.0597
β2 : 0.865 (0.0926) R2dC : 0.134 R2C : 0.0122
β3 : -0.815 (0.0964) R2dE : 0.125 R2E : -0.0368
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.61 (0.282) R2dD*E : 0.163 R2D*E : -0.0343
γ1 : -0.529 (0.08) R2dN8 : 0.0962 R2N8 : -0.0398
σ : 0.659
deviance : 200.37
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_____
C
peak time of C : 15.4
E
wheather : temperature
threshold : 20.61
memory length : 789
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.28
open length of G : 1.99

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
191.29 0.65 8.62 -1.42 0.792 -0.741 2.07 1.86 -0.488 15.6 20.69 777 4 2.12
204.47 0.666 8.59 -0.992 0.675 -0.71 2.92 -- -0.405 14.8 20.62 757 3.81 2.2
200.37 0.659 8.63 -1.58 0.865 -0.815 -- 2.61 -0.529 15.4 20.61 789 4.28 1.99
236.36 0.716 8.58 -0.948 0.762 -0.834 -- -- -0.39 15.3 20.6 765 3.6 2.43
237.38 0.718 8.62 -1.51 -- -0.573 -- 2.44 -0.49 -- 20.6 781 4.15 2.17
230.69 0.712 8.54 -0.822 0.523 -- 3.55 -- -0.22 15.2 -- -- -- --
266.3 0.764 8.54 -0.75 0.646 -- -- -- -0.197 17.1 -- -- -- --
262.91 0.755 8.54 -0.917 -- -0.679 -- -- -0.242 -- 19.7 784 2.3 2.65
258.99 0.75 8.54 -- 0.766 -0.846 -- -- -0.243 15.6 20.3 745 2.26 5.41
288.22 0.793 8.53 -0.773 -- -- -- -- -0.213 -- -- -- -- --
281.12 0.784 8.52 -- 0.66 -- -- -- -0.114 17 -- -- -- --
285.03 0.786 8.53 -- -- -0.647 -- -- -0.245 -- 19.97 836 1.28 2.8
303.98 0.814 8.51 -- -- -- -- -- -0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 194.24 temperature 20.0 720 < th dose independent rect. 4 3
6 195.10 temperature 25.0 720 < th dose dependent rect. 4 3
49 198.81 precipitation 0.1 30 < th dose independent rect. 6 18
50 198.81 precipitation 0.1 30 < th dose dependent rect. 6 18
57 199.01 temperature 20.0 720 < th dose independent sin 7 NA
66 199.28 temperature 25.0 30 < th dose independent rect. 2 14
95 200.14 precipitation 0.1 10 < th dose independent rect. 2 4
96 200.14 precipitation 0.1 10 < th dose dependent rect. 2 4
98 200.19 temperature 30.0 10 < th dose dependent rect. 2 14
101 200.30 precipitation 0.1 30 < th dose independent rect. 24 6
103 200.30 precipitation 0.1 30 < th dose dependent rect. 24 6
142 201.00 wind 9.0 30 < th dose independent rect. 6 18
144 201.05 atmosphere 1005.0 14400 < th dose independent rect. 17 1
161 201.24 atmosphere 1015.0 1440 < th dose independent rect. 1 6
163 201.25 temperature 20.0 30 > th dose independent rect. 6 14
165 201.28 temperature 10.0 30 > th dose dependent rect. 6 18
168 201.32 temperature 10.0 1440 > th dose independent rect. 1 6
171 201.32 temperature 30.0 1440 < th dose independent rect. 1 6
175 201.32 humidity 50.0 1440 > th dose independent rect. 1 6
180 201.32 atmosphere 995.0 1440 > th dose independent rect. 1 6
181 201.32 radiation 40.0 1440 < th dose independent rect. 1 6
186 201.32 temperature 10.0 1440 > th dose independent rect. 7 18
202 201.69 temperature 20.0 270 > th dose independent rect. 3 21
203 201.70 temperature 25.0 720 < th dose independent rect. 7 1
207 201.72 wind 9.0 10 < th dose independent rect. 6 20
208 201.73 wind 7.0 30 < th dose independent rect. 24 6
211 201.75 temperature 25.0 30 < th dose independent sin 3 NA
219 201.86 atmosphere 1010.0 30 < th dose independent rect. 24 6
222 201.90 temperature 15.0 30 > th dose independent rect. 24 6
225 201.92 temperature 30.0 30 < th dose independent rect. 24 6
226 201.92 humidity 50.0 30 > th dose independent rect. 24 6
229 201.92 atmosphere 995.0 30 > th dose independent rect. 24 6
230 201.92 radiation 20.0 30 < th dose independent rect. 24 6
233 201.92 temperature 10.0 30 > th dose independent rect. 6 18
243 202.04 wind 9.0 30 < th dose dependent rect. 24 6
249 202.11 atmosphere 1005.0 14400 > th dose independent rect. 17 2
269 202.39 temperature 25.0 720 < th dose dependent sin 7 NA
272 202.42 temperature 25.0 30 < th dose independent rect. 2 10
294 202.60 wind 9.0 1440 < th dose independent rect. 2 5
318 202.63 atmosphere 1015.0 30 < th dose independent rect. 6 18
325 202.69 temperature 10.0 10 > th dose independent rect. 2 4
327 202.69 temperature 30.0 10 < th dose independent rect. 2 4
328 202.69 humidity 50.0 10 > th dose independent rect. 2 4
331 202.69 atmosphere 995.0 10 > th dose independent rect. 2 4
332 202.69 atmosphere 1010.0 10 < th dose independent rect. 2 4
334 202.69 radiation 20.0 10 < th dose independent rect. 2 4
338 202.69 temperature 10.0 10 > th dose independent rect. 6 20
386 202.83 wind 3.0 43200 > th dose dependent rect. 24 2
418 202.96 radiation 40.0 30 < th dose dependent rect. 24 6
420 202.98 temperature 10.0 30 > th dose dependent rect. 6 14
456 203.15 temperature 25.0 10 < th dose dependent rect. 4 14
460 203.18 temperature 20.0 720 > th dose independent rect. 3 12
478 203.22 radiation 10.0 14400 < th dose dependent rect. 24 1
503 203.38 temperature 25.0 30 < th dose dependent rect. 4 12
506 203.40 humidity 50.0 720 > th dose dependent rect. 21 12
521 203.53 radiation 40.0 10 < th dose dependent rect. 2 4
543 203.75 wind 9.0 43200 < th dose dependent rect. 2 1
546 203.76 atmosphere 995.0 30 > th dose independent rect. 6 18
551 203.79 temperature 30.0 14400 < th dose independent rect. 12 1
564 203.86 temperature 25.0 30 < th dose independent rect. 2 8
579 203.92 wind 9.0 14400 < th dose independent rect. 24 1
614 204.15 atmosphere 995.0 10 > th dose dependent rect. 2 4
635 204.26 humidity 80.0 720 > th dose independent rect. 5 3
652 204.33 temperature 30.0 14400 > th dose independent rect. 12 1
659 204.35 atmosphere 995.0 10 > th dose independent rect. 6 20
687 204.51 temperature 10.0 10 > th dose dependent rect. 2 4
697 204.60 temperature 10.0 30 > th dose dependent rect. 24 6
746 204.91 temperature 25.0 30 < th dose independent rect. 4 12
750 204.93 temperature 25.0 14400 > th dose dependent rect. 16 1
755 204.94 humidity 50.0 720 > th dose dependent rect. 3 6
757 204.95 wind 1.0 10 > th dose independent rect. 6 20
784 205.12 wind 5.0 43200 > th dose independent rect. 24 2
788 205.14 precipitation 0.1 43200 > th dose dependent rect. 7 9
821 205.33 humidity 90.0 1440 < th dose dependent rect. 23 9
840 205.42 humidity 70.0 720 > th dose dependent rect. 5 3
852 205.52 wind 5.0 43200 < th dose independent rect. 24 2
855 205.52 temperature 30.0 10 < th dose dependent sin 2 NA
867 205.57 precipitation 0.1 43200 > th dose independent rect. 4 13
878 205.60 precipitation 0.1 43200 < th dose independent rect. 4 13
882 205.60 precipitation 0.1 43200 < th dose dependent rect. 4 13
883 205.61 humidity 90.0 1440 < th dose dependent rect. 2 6
894 205.64 radiation 1.0 720 < th dose dependent rect. 5 2
938 205.74 temperature 25.0 14400 > th dose independent rect. 14 14
941 205.75 humidity 90.0 43200 > th dose dependent rect. 15 1
942 205.75 humidity 50.0 30 > th dose dependent rect. 24 6
944 205.76 temperature 25.0 14400 > th dose independent rect. 14 16
985 205.91 wind 1.0 43200 > th dose independent rect. 4 2
992 205.93 temperature 30.0 30 < th dose dependent rect. 2 4
997 205.94 temperature 25.0 14400 < th dose independent rect. 14 16