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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0454900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.9 (0.0363) R2 : 0.338
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.64 (0.11) R2dC : 0.527 R2C : 0.0875
β3 : -1.05 (0.105) R2dE : 0.242 R2E : -0.199
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.199 (0.0765) R2dN8 : 0.0128 R2N8 : 0.00653
σ : 0.682
deviance : 214.17
__
_____
C
peak time of C : 0.148
E
wheather : temperature
threshold : 20.8
memory length : 31
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.6
open length of G : 6.77

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
206.76 0.676 3.9 -0.199 1.61 -0.98 -1.67 1.39 0.171 0.0442 20.8 59 19 7.02
210.46 0.676 3.9 -0.203 1.6 -0.993 -0.962 -- 0.16 0.191 21 53 19.3 6.84
214.47 0.682 3.91 -0.214 1.66 -1 -- 0.378 0.16 0.0544 20.08 42 19.4 6.84
213.09 0.68 3.9 -0.223 1.66 -1.06 -- -- 0.174 0.119 20.78 35 19.6 6.71
257.73 0.748 3.96 -0.298 -- 1.17 -- -0.952 0.00538 -- 13.68 359 21 6
252.8 0.745 3.89 -0.291 0.992 -- -1.15 -- 0.132 1.04 -- -- -- --
258.34 0.753 3.89 -0.25 0.995 -- -- -- 0.138 1.11 -- -- -- --
260.99 0.752 3.94 -0.346 -- 1.14 -- -- 0.0765 -- 13.98 349 21 6.05
214.17 0.682 3.9 -- 1.64 -1.05 -- -- 0.199 0.148 20.8 31 19.6 6.77
319.79 0.836 3.87 -0.212 -- -- -- -- 0.157 -- -- -- -- --
259.99 0.754 3.88 -- 0.991 -- -- -- 0.165 1.1 -- -- -- --
261.23 0.753 3.88 -- -- 1.13 -- -- 0.2 -- 13.51 364 20.8 6.17
320.98 0.836 3.87 -- -- -- -- -- 0.181 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 209.52 temperature 20.0 10 > th dose dependent rect. 2 1
2 209.58 temperature 20.0 30 > th dose independent rect. 19 7
5 209.96 atmosphere 1005.0 30 > th dose dependent rect. 2 1
7 210.03 atmosphere 1005.0 30 > th dose independent rect. 2 1
9 210.08 humidity 80.0 30 > th dose independent rect. 2 1
10 210.11 wind 5.0 30 < th dose independent rect. 2 1
12 210.11 radiation 10.0 43200 < th dose dependent rect. 3 1
14 210.15 temperature 20.0 30 > th dose independent rect. 2 1
19 210.22 wind 9.0 1440 < th dose independent rect. 3 1
20 210.22 temperature 10.0 1440 > th dose independent rect. 3 1
23 210.22 temperature 30.0 1440 < th dose independent rect. 3 1
27 210.22 humidity 50.0 1440 > th dose independent rect. 3 1
36 210.22 atmosphere 995.0 1440 > th dose independent rect. 3 1
37 210.22 radiation 1.0 1440 < th dose independent rect. 3 1
57 210.22 temperature 10.0 1440 > th dose independent rect. 4 23
60 210.22 radiation 1.0 1440 < th dose dependent rect. 3 1
68 210.24 humidity 70.0 30 > th dose dependent rect. 2 1
71 210.25 wind 1.0 30 > th dose independent rect. 2 1
76 210.27 wind 9.0 30 < th dose dependent rect. 2 1
78 210.29 temperature 10.0 30 > th dose independent rect. 2 1
80 210.29 temperature 30.0 30 < th dose independent rect. 2 1
81 210.29 humidity 50.0 30 > th dose independent rect. 2 1
84 210.29 atmosphere 995.0 30 > th dose independent rect. 2 1
85 210.29 atmosphere 1010.0 30 < th dose independent rect. 2 1
87 210.29 radiation 1.0 30 < th dose independent rect. 2 1
92 210.29 precipitation 0.1 30 < th dose independent rect. 2 1
93 210.29 temperature 10.0 30 > th dose independent rect. 3 23
95 210.29 radiation 1.0 30 < th dose dependent rect. 2 1
100 210.29 precipitation 0.1 30 < th dose dependent rect. 2 1
107 210.71 atmosphere 1015.0 30 < th dose dependent rect. 2 1
114 211.29 temperature 30.0 30 < th dose dependent rect. 2 1
124 212.02 atmosphere 995.0 30 > th dose independent rect. 3 23
135 212.76 temperature 20.0 10 > th dose independent rect. 6 20
136 212.78 precipitation 0.1 30 < th dose independent rect. 3 23
137 212.78 precipitation 0.1 30 < th dose dependent rect. 3 23
182 214.54 wind 9.0 30 < th dose independent rect. 3 23
193 217.07 temperature 20.0 30 > th dose independent rect. 3 23
200 218.34 temperature 15.0 30 > th dose dependent rect. 19 7
229 221.87 temperature 10.0 30 > th dose dependent rect. 3 23
247 224.07 temperature 10.0 10 > th dose dependent rect. 6 20
259 224.98 humidity 50.0 14400 > th dose independent rect. 19 8
276 225.80 wind 3.0 30 < th dose dependent rect. 2 5
298 226.68 humidity 50.0 30 > th dose independent rect. 3 23
304 226.94 radiation 20.0 14400 < th dose independent rect. 3 3
331 227.68 temperature 25.0 270 > th dose independent rect. 23 4
349 228.13 atmosphere 1010.0 30 < th dose independent rect. 19 7
354 228.34 humidity 70.0 10 > th dose independent rect. 19 7
358 228.38 radiation 1.0 1440 < th dose dependent rect. 20 7
360 228.43 atmosphere 1000.0 270 > th dose dependent rect. 23 4
366 228.64 atmosphere 1015.0 30 < th dose independent rect. 3 23
372 228.68 temperature 10.0 1440 > th dose independent rect. 20 7
375 228.68 temperature 30.0 1440 < th dose independent rect. 20 7
379 228.68 humidity 50.0 1440 > th dose independent rect. 20 7
385 228.68 atmosphere 995.0 1440 > th dose independent rect. 20 7
386 228.68 radiation 1.0 1440 < th dose independent rect. 20 7
406 228.68 temperature 10.0 1440 > th dose independent rect. 3 17
422 228.94 temperature 20.0 270 > th dose dependent rect. 20 2
425 228.98 atmosphere 1005.0 90 > th dose dependent rect. 1 5
429 229.06 precipitation 0.1 30 < th dose independent rect. 2 17
430 229.06 temperature 30.0 30 < th dose independent rect. 3 23
431 229.06 precipitation 0.1 30 < th dose dependent rect. 2 17
439 229.28 radiation 40.0 43200 < th dose dependent rect. 20 7
440 229.30 atmosphere 995.0 30 > th dose dependent rect. 2 17
442 229.32 wind 9.0 30 < th dose dependent rect. 19 7
450 229.49 atmosphere 1005.0 270 > th dose independent rect. 23 4
452 229.54 temperature 20.0 90 > th dose independent rect. 19 16
455 229.60 wind 9.0 43200 < th dose independent rect. 15 2
467 229.79 temperature 20.0 10 > th dose independent rect. 19 21
469 229.83 atmosphere 1000.0 10 > th dose dependent rect. 2 4
471 229.89 wind 3.0 30 < th dose dependent rect. 2 7
477 230.03 wind 9.0 43200 > th dose independent rect. 15 2
480 230.06 humidity 70.0 720 > th dose independent rect. 18 7
505 230.36 wind 9.0 43200 > th dose independent rect. 21 23
514 230.47 wind 9.0 43200 > th dose dependent rect. 14 3
519 230.53 temperature 30.0 30 < th dose independent rect. 18 8
521 230.54 wind 9.0 43200 < th dose independent rect. 15 5
527 230.55 humidity 50.0 30 > th dose independent rect. 19 7
529 230.55 atmosphere 995.0 30 > th dose independent rect. 19 7
530 230.55 radiation 1.0 30 < th dose independent rect. 19 7
535 230.55 temperature 10.0 30 > th dose independent rect. 2 17
537 230.55 atmosphere 1015.0 30 < th dose independent rect. 2 17
539 230.55 radiation 1.0 30 < th dose dependent rect. 19 7
547 230.61 wind 9.0 30 < th dose independent rect. 19 7
553 230.64 precipitation 0.1 30 < th dose independent rect. 19 7
554 230.64 precipitation 0.1 30 < th dose dependent rect. 19 7
555 230.65 wind 9.0 43200 > th dose independent rect. 1 19
563 230.68 humidity 50.0 30 > th dose independent rect. 2 17
569 230.71 wind 9.0 43200 > th dose independent rect. 14 6
575 230.73 wind 9.0 43200 < th dose independent rect. 21 23
580 230.74 wind 7.0 43200 > th dose dependent rect. 21 22
634 230.92 wind 9.0 43200 < th dose independent rect. 3 17
636 230.92 wind 9.0 43200 > th dose dependent rect. 10 7
641 230.94 wind 9.0 43200 > th dose independent rect. 15 23
661 231.04 temperature 20.0 10 > th dose independent rect. 20 15
667 231.05 wind 9.0 43200 > th dose dependent rect. 9 10
672 231.06 wind 9.0 43200 > th dose independent rect. 18 23
680 231.08 wind 9.0 43200 > th dose dependent rect. 15 1
691 231.12 wind 9.0 43200 > th dose independent rect. 13 21
711 231.20 wind 9.0 30 < th dose independent rect. 2 17
713 231.21 atmosphere 1005.0 10 > th dose independent rect. 2 4
723 231.23 humidity 50.0 30 > th dose dependent rect. 18 8
728 231.27 atmosphere 995.0 30 > th dose independent rect. 2 17
734 231.29 wind 9.0 43200 > th dose independent sin 1 NA
747 231.35 wind 9.0 43200 > th dose independent no NA NA
750 231.35 wind 9.0 43200 > th dose independent rect. 1 23
761 231.37 wind 9.0 43200 > th dose independent rect. 6 23
766 231.38 wind 1.0 10 > th dose independent rect. 20 15
767 231.38 wind 9.0 43200 < th dose independent rect. 13 21
847 231.55 wind 9.0 43200 < th dose independent rect. 15 23
859 231.59 atmosphere 1005.0 270 > th dose independent rect. 22 7
861 231.59 wind 9.0 43200 > th dose independent rect. 15 18
865 231.60 wind 9.0 43200 > th dose dependent sin 21 NA
921 231.65 wind 9.0 43200 < th dose independent rect. 18 23
936 231.68 wind 9.0 43200 < th dose independent rect. 15 18
944 231.69 wind 9.0 43200 > th dose dependent rect. 11 22
995 231.83 wind 9.0 43200 < th dose independent rect. 3 22
999 231.84 wind 9.0 43200 < th dose independent sin 1 NA