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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0453500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0154) R2 : 0.00113
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0233 (0.0324) R2dN8 : 0.00146 R2N8 : 0.00113
σ : 0.29
deviance : 38.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.04 0.29 2.87 0.0818 0.197 -0.162 -0.487 0.447 0.0483 12.7 0.5193 106 -- --
38.24 0.288 2.88 0.0581 0.149 -0.12 -0.0624 -- 0.0371 13.3 0.46 168 -- --
38.48 0.291 2.88 0.0489 0.0633 -0.0457 -- 0.0845 0.0294 11.7 0.5193 106 -- --
38.16 0.288 2.87 0.0493 0.189 -0.157 -- -- 0.0444 12.8 0.148 120 -- --
38.53 0.291 2.88 0.0459 -- -0.00377 -- 0.0786 0.0286 -- 0.5193 106 -- --
38.52 0.291 2.88 0.0432 0.00106 -- -0.146 -- 0.0287 18.3 -- -- -- --
38.57 0.291 2.88 0.0452 0.00941 -- -- -- 0.0284 12.5 -- -- -- --
38.55 0.289 2.88 0.0409 -- -0.0136 -- -- 0.0292 -- 0.5172 110 -- --
38.22 0.288 2.88 -- 0.194 -0.162 -- -- 0.0336 12.8 0.47 121 -- --
38.57 0.29 2.88 0.0449 -- -- -- -- 0.0282 -- -- -- -- --
38.62 0.291 2.88 -- 0.00876 -- -- -- 0.0234 12.2 -- -- -- --
38.6 0.289 2.88 -- -- -0.0141 -- -- 0.0302 -- 0.3801 112 -- --
38.63 0.29 2.88 -- -- -- -- -- 0.0233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.94 temperature 10.0 1440 > th dose independent rect. 21 1
4 33.94 temperature 30.0 1440 < th dose independent rect. 21 1
8 33.94 humidity 50.0 1440 > th dose independent rect. 21 1
14 33.94 atmosphere 995.0 1440 > th dose independent rect. 21 1
15 33.94 radiation 1.0 1440 < th dose independent rect. 21 1
35 33.94 temperature 10.0 1440 > th dose independent rect. 22 23
38 33.94 radiation 40.0 4320 < th dose dependent rect. 21 1
46 33.98 temperature 25.0 30 > th dose independent rect. 20 1
49 34.01 atmosphere 1005.0 30 > th dose dependent rect. 20 1
51 34.02 humidity 80.0 30 > th dose independent rect. 20 1
52 34.03 temperature 20.0 30 > th dose dependent rect. 20 1
56 34.06 wind 3.0 30 > th dose independent rect. 20 1
59 34.07 wind 5.0 30 < th dose independent rect. 20 1
63 34.08 humidity 90.0 30 < th dose independent rect. 20 1
64 34.08 atmosphere 1005.0 30 > th dose independent rect. 20 1
69 34.12 temperature 10.0 30 > th dose independent rect. 20 1
71 34.12 temperature 30.0 30 < th dose independent rect. 20 1
72 34.12 humidity 50.0 30 > th dose independent rect. 20 1
76 34.12 atmosphere 1010.0 30 < th dose independent rect. 20 1
78 34.12 radiation 1.0 30 < th dose independent rect. 20 1
83 34.12 precipitation 0.1 30 < th dose independent rect. 20 1
84 34.12 temperature 10.0 30 > th dose independent rect. 21 23
85 34.12 humidity 50.0 30 > th dose dependent rect. 20 1
87 34.12 radiation 1.0 30 < th dose dependent rect. 20 1
92 34.12 precipitation 0.1 30 < th dose dependent rect. 20 1
93 34.13 wind 9.0 30 < th dose dependent rect. 20 1
96 34.17 wind 1.0 30 > th dose dependent rect. 20 1
101 34.33 atmosphere 1015.0 30 < th dose dependent rect. 20 1
103 34.38 humidity 90.0 30 < th dose dependent rect. 20 1
106 34.53 temperature 30.0 30 < th dose dependent rect. 20 1
117 34.82 wind 9.0 1440 < th dose independent rect. 21 1
122 34.93 wind 9.0 30 < th dose independent rect. 21 23
173 36.96 atmosphere 995.0 30 > th dose independent rect. 21 23
174 36.99 temperature 25.0 30 > th dose independent rect. 4 1
179 37.04 temperature 25.0 90 > th dose dependent rect. 4 1
181 37.05 humidity 90.0 10 < th dose independent rect. 4 1
189 37.11 wind 1.0 30 > th dose dependent rect. 4 1
190 37.12 precipitation 0.1 30 < th dose independent rect. 21 23
191 37.12 precipitation 0.1 30 < th dose dependent rect. 21 23
197 37.26 wind 7.0 4320 < th dose independent rect. 5 1
201 37.27 temperature 10.0 1440 > th dose independent rect. 5 1
204 37.27 temperature 30.0 1440 < th dose independent rect. 5 1
208 37.27 humidity 50.0 1440 > th dose independent rect. 5 1
217 37.27 atmosphere 995.0 1440 > th dose independent rect. 5 1
218 37.27 atmosphere 1015.0 1440 < th dose independent rect. 5 1
219 37.27 radiation 20.0 1440 < th dose independent rect. 5 1
228 37.27 temperature 10.0 1440 > th dose independent rect. 6 23
237 37.35 atmosphere 1005.0 90 > th dose dependent rect. 4 1
240 37.37 wind 1.0 30 > th dose independent rect. 4 1
242 37.37 humidity 90.0 10 < th dose dependent rect. 4 1
252 37.45 wind 9.0 90 > th dose independent rect. 15 1
256 37.45 wind 9.0 90 > th dose dependent rect. 15 1
258 37.46 wind 9.0 10 > th dose independent rect. 15 1
268 37.46 wind 9.0 10 > th dose dependent rect. 15 1
325 37.59 wind 9.0 30 < th dose independent rect. 5 23
337 37.62 atmosphere 1005.0 90 > th dose independent rect. 4 1
346 37.63 radiation 1.0 90 < th dose dependent rect. 4 1
354 37.65 radiation 1.0 90 < th dose independent rect. 4 1
358 37.65 atmosphere 1015.0 30 < th dose independent rect. 21 23
361 37.66 wind 5.0 90 < th dose independent rect. 4 1
363 37.66 temperature 30.0 10 < th dose dependent rect. 4 1
373 37.67 temperature 10.0 90 > th dose independent rect. 4 1
375 37.67 temperature 25.0 30 < th dose independent rect. 4 1
377 37.67 humidity 50.0 90 > th dose independent rect. 4 1
382 37.67 atmosphere 1010.0 90 < th dose independent rect. 4 1
387 37.67 precipitation 0.1 90 < th dose independent rect. 4 1
390 37.67 temperature 10.0 90 > th dose independent rect. 5 23
391 37.67 precipitation 0.1 90 < th dose dependent rect. 4 1
392 37.68 wind 3.0 10 < th dose independent rect. 4 1
395 37.68 atmosphere 995.0 90 > th dose independent rect. 5 23
397 37.68 atmosphere 995.0 10 > th dose dependent rect. 4 1
401 37.69 temperature 10.0 10 > th dose independent rect. 4 1
404 37.69 humidity 50.0 10 > th dose independent rect. 4 1
408 37.69 atmosphere 995.0 10 > th dose independent rect. 4 1
410 37.69 atmosphere 1010.0 10 < th dose independent rect. 4 1
412 37.69 radiation 1.0 10 < th dose independent rect. 4 1
417 37.69 precipitation 0.1 10 < th dose independent rect. 4 1
418 37.69 temperature 10.0 10 > th dose independent rect. 5 23
420 37.69 wind 5.0 10 < th dose dependent rect. 4 1
424 37.69 radiation 1.0 10 < th dose dependent rect. 4 1
429 37.69 precipitation 0.1 10 < th dose dependent rect. 4 1
433 37.70 humidity 50.0 10 > th dose dependent rect. 4 1
445 37.71 precipitation 0.1 90 < th dose independent rect. 5 23
447 37.71 wind 9.0 90 < th dose dependent rect. 4 1
450 37.71 atmosphere 1015.0 10 < th dose dependent rect. 4 1
453 37.71 precipitation 0.1 90 < th dose dependent rect. 5 23
477 37.72 atmosphere 995.0 10 > th dose independent rect. 5 23
480 37.72 temperature 10.0 10 > th dose dependent rect. 4 1
525 37.75 wind 9.0 720 < th dose independent rect. 21 16
541 37.76 wind 9.0 30 < th dose dependent rect. 21 23
572 37.80 radiation 1.0 90 < th dose dependent rect. 4 17
584 37.82 temperature 30.0 14400 < th dose independent rect. 4 5
610 37.83 radiation 1.0 90 > th dose independent rect. 16 22
619 37.83 atmosphere 1005.0 30 > th dose dependent rect. 14 7
621 37.84 temperature 30.0 14400 < th dose independent rect. 8 1
623 37.84 temperature 30.0 14400 < th dose independent rect. 21 12
626 37.84 wind 9.0 720 < th dose independent rect. 21 20
629 37.84 temperature 30.0 14400 > th dose dependent rect. 8 1
630 37.84 temperature 25.0 14400 > th dose dependent rect. 19 1
646 37.85 temperature 30.0 14400 > th dose independent sin 11 NA
648 37.85 temperature 30.0 14400 < th dose independent sin 11 NA
650 37.85 temperature 30.0 14400 > th dose independent rect. 8 1
680 37.85 temperature 30.0 14400 < th dose independent rect. 18 4
684 37.85 wind 9.0 720 < th dose independent rect. 1 8
685 37.85 temperature 10.0 720 > th dose independent rect. 1 8
687 37.85 humidity 50.0 720 > th dose independent rect. 1 8
688 37.85 atmosphere 995.0 720 > th dose independent rect. 1 8
695 37.85 temperature 30.0 14400 < th dose independent rect. 18 12
700 37.85 temperature 10.0 720 > th dose independent rect. 9 16
701 37.85 temperature 30.0 14400 > th dose independent rect. 15 18
702 37.85 temperature 30.0 14400 < th dose independent rect. 15 18
717 37.85 temperature 30.0 14400 > th dose dependent sin 12 NA
722 37.85 temperature 30.0 14400 > th dose dependent rect. 13 1
727 37.85 temperature 30.0 14400 > th dose dependent rect. 17 2
738 37.85 temperature 30.0 14400 > th dose dependent rect. 13 5
773 37.86 temperature 25.0 720 > th dose independent rect. 4 1
774 37.86 temperature 30.0 14400 < th dose independent rect. 18 1
793 37.86 temperature 30.0 14400 < th dose independent rect. 16 3
795 37.86 temperature 30.0 14400 > th dose independent rect. 15 4
862 37.86 temperature 30.0 14400 > th dose dependent no NA NA