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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0453300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.94 (0.0457) R2 : 0.379
β1 : -0.752 (0.167) R2dD : 0.0286 R2D : 0.0227
β2 : 1.14 (0.117) R2dC : 0.129 R2C : 0.125
β3 : 1.59 (0.159) R2dE : 0.155 R2E : 0.207
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.39 (0.102) R2dN8 : 0.0329 R2N8 : 0.0506
σ : 0.842
deviance : 326.99
__
_____
C
peak time of C : 5.23
E
wheather : wind
threshold : 3.065
memory length : 4301
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.1
open length of G : 0.93

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
315.98 0.835 5.93 -0.662 1.13 1.49 1.59 -1.48 -0.383 5.31 3.051 4302 8.1 0.917
320.86 0.834 5.93 -0.745 1.13 1.59 1.58 -- -0.383 5.35 3.034 4301 8.11 0.917
322.17 0.836 5.93 -0.658 1.14 1.5 -- -1.46 -0.384 5.18 3.056 4301 8.1 0.921
326.99 0.842 5.94 -0.752 1.14 1.59 -- -- -0.39 5.23 3.065 4301 8.1 0.93
388.86 0.918 5.94 -0.607 -- 1.59 -- -1.39 -0.349 -- 3.063 4352 8.1 0.917
390.44 0.926 6.02 -0.994 1.18 -- 1.63 -- -0.751 5.14 -- -- -- --
396.99 0.933 6.03 -0.996 1.19 -- -- -- -0.759 4.99 -- -- -- --
392.74 0.923 5.96 -0.701 -- 1.66 -- -- -0.39 -- 3.053 4350 8.11 0.917
340.33 0.859 5.93 -- 1.1 1.72 -- -- -0.353 5.16 3.155 4293 8.12 0.957
471.29 1.01 6.04 -0.952 -- -- -- -- -0.729 -- -- -- -- --
423.11 0.962 6 -- 1.17 -- -- -- -0.648 5.01 -- -- -- --
403.69 0.936 5.93 -- -- 1.79 -- -- -0.253 -- 3.198 4347 8.08 1
495.21 1.04 6.02 -- -- -- -- -- -0.623 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 317.53 wind 3 4320 > th dose independent rect. 8 1
2 319.14 wind 3 4320 < th dose independent rect. 8 1
3 324.78 radiation 30 4320 > th dose dependent rect. 7 1
19 325.04 radiation 30 4320 > th dose independent rect. 16 16
21 326.33 wind 5 4320 < th dose dependent rect. 8 1
22 326.58 radiation 30 4320 > th dose independent rect. 7 1
37 327.67 atmosphere 995 43200 < th dose independent rect. 18 17
38 328.03 atmosphere 995 43200 > th dose independent rect. 18 17
39 328.09 atmosphere 995 43200 > th dose independent sin 8 NA
40 328.35 atmosphere 995 43200 < th dose independent sin 8 NA
42 328.65 wind 1 14400 < th dose independent rect. 24 3
43 328.66 radiation 30 4320 < th dose independent rect. 6 2
44 328.70 atmosphere 995 43200 > th dose independent rect. 21 14
47 328.90 atmosphere 995 43200 < th dose independent rect. 21 14
50 328.94 radiation 30 4320 < th dose independent rect. 24 8
52 329.03 radiation 30 4320 < th dose independent rect. 21 11
57 329.20 atmosphere 995 43200 < th dose dependent rect. 16 17
60 329.34 atmosphere 995 43200 < th dose dependent sin 11 NA
97 330.03 radiation 30 4320 < th dose independent rect. 2 6
99 330.08 wind 1 14400 > th dose independent rect. 24 2
106 330.44 atmosphere 995 43200 < th dose dependent rect. 21 12
117 330.91 atmosphere 995 43200 > th dose independent rect. 4 4
124 331.33 atmosphere 995 43200 > th dose independent rect. 2 7
126 331.67 atmosphere 995 43200 < th dose independent rect. 4 4
128 331.71 atmosphere 995 43200 < th dose dependent rect. 3 5
132 331.76 atmosphere 995 43200 < th dose independent rect. 1 8
137 331.95 radiation 20 1440 < th dose dependent rect. 11 1
138 332.06 wind 1 4320 > th dose dependent rect. 8 1
172 334.10 wind 9 14400 < th dose independent rect. 23 2
177 334.40 wind 1 14400 < th dose dependent rect. 1 1
179 334.47 wind 3 4320 < th dose independent rect. 6 3
186 334.70 atmosphere 995 43200 < th dose dependent rect. 12 18
204 336.04 wind 3 4320 < th dose dependent rect. 6 1
207 336.21 temperature 20 1440 > th dose independent rect. 6 1
220 337.00 temperature 20 720 > th dose independent rect. 23 18
221 337.08 temperature 20 1440 < th dose independent rect. 6 1
222 337.11 wind 1 14400 < th dose dependent rect. 24 4
227 337.17 wind 5 4320 < th dose dependent rect. 6 3
229 337.18 wind 1 14400 < th dose dependent rect. 22 6
232 337.38 temperature 20 1440 < th dose independent rect. 19 12
236 337.45 temperature 20 1440 < th dose independent rect. 19 9
237 337.47 temperature 20 1440 > th dose independent rect. 19 9
239 337.56 temperature 20 1440 > th dose independent rect. 19 12
253 337.98 temperature 20 720 > th dose independent rect. 1 16
255 338.05 wind 9 14400 < th dose independent rect. 23 4
262 338.21 atmosphere 995 43200 < th dose dependent sin 15 NA
296 338.75 radiation 10 1440 < th dose independent rect. 11 7
300 338.82 temperature 20 1440 > th dose independent sin 11 NA
304 338.85 temperature 20 1440 < th dose independent sin 11 NA
306 338.87 humidity 90 4320 > th dose dependent rect. 7 3
333 339.24 radiation 20 1440 < th dose independent rect. 11 1
364 339.53 humidity 90 4320 > th dose dependent rect. 7 7
414 339.89 radiation 10 1440 < th dose independent rect. 11 14
415 339.89 radiation 10 1440 < th dose independent rect. 11 16
422 339.92 radiation 10 1440 < th dose independent rect. 11 11
437 340.06 wind 5 14400 > th dose independent rect. 23 1
500 340.52 wind 1 4320 > th dose dependent rect. 6 3
515 340.65 temperature 20 1440 < th dose independent rect. 1 1
557 341.01 wind 5 14400 < th dose independent rect. 23 1
598 341.29 temperature 20 4320 > th dose independent rect. 19 2
605 341.33 humidity 90 4320 > th dose dependent rect. 7 12
609 341.39 temperature 20 270 > th dose dependent rect. 5 8
610 341.40 temperature 20 1440 > th dose independent rect. 3 1
611 341.40 temperature 20 4320 < th dose independent rect. 19 2
616 341.46 temperature 20 1440 < th dose independent rect. 3 1
619 341.48 wind 9 4320 < th dose dependent rect. 6 1
620 341.48 temperature 20 270 > th dose dependent rect. 5 6
625 341.54 wind 1 43200 > th dose dependent rect. 1 2
699 342.01 wind 1 14400 < th dose dependent rect. 16 12
710 342.07 wind 9 43200 < th dose dependent rect. 1 1
727 342.19 wind 9 43200 > th dose independent rect. 10 3
801 342.60 radiation 10 1440 < th dose independent sin 18 NA
844 342.79 humidity 90 4320 > th dose independent rect. 7 4
884 342.97 wind 5 14400 < th dose dependent rect. 22 1
919 343.10 wind 9 14400 > th dose dependent rect. 23 1
922 343.12 humidity 90 4320 > th dose independent rect. 6 7
932 343.15 wind 9 43200 > th dose independent rect. 9 5
935 343.19 radiation 10 1440 < th dose independent rect. 15 2
948 343.25 temperature 20 4320 > th dose independent rect. 16 7
975 343.35 wind 9 14400 > th dose independent rect. 23 1