Os04g0452100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cryptochrome 1.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0452100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Cryptochrome 1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.04 | 0.23 | 12.3 | 0.63 | 0.813 | 0.662 | -0.37 | -0.6 | 0.0872 | 3.12 | 29.3 | 1746 | -- | -- |
| 24.18 | 0.229 | 12.4 | 0.522 | 0.82 | 0.595 | -0.331 | -- | 0.0444 | 3.19 | 29.2 | 1721 | -- | -- |
| 24.48 | 0.23 | 12.3 | 0.643 | 0.813 | 0.662 | -- | -0.623 | 0.0909 | 3.15 | 29.28 | 1738 | -- | -- |
| 24.58 | 0.231 | 12.4 | 0.501 | 0.829 | 0.595 | -- | -- | 0.0483 | 3.18 | 29.29 | 1722 | -- | -- |
| 39.25 | 0.292 | 12.3 | 0.617 | -- | 0.917 | -- | -0.567 | 0.139 | -- | 28.6 | 259 | -- | -- |
| 37.12 | 0.286 | 12.4 | 0.322 | 0.863 | -- | -0.405 | -- | 0.000652 | 3.37 | -- | -- | -- | -- |
| 37.64 | 0.287 | 12.4 | 0.33 | 0.862 | -- | -- | -- | 0.00297 | 3.41 | -- | -- | -- | -- |
| 38.95 | 0.291 | 12.3 | 0.525 | -- | 0.857 | -- | -- | 0.125 | -- | 28.2 | 247 | -- | -- |
| 30.48 | 0.257 | 12.4 | -- | 0.908 | 0.528 | -- | -- | -0.026 | 2.89 | 29.4 | 1020 | -- | -- |
| 79.39 | 0.416 | 12.4 | 0.366 | -- | -- | -- | -- | 0.0258 | -- | -- | -- | -- | -- |
| 40.51 | 0.298 | 12.4 | -- | 0.869 | -- | -- | -- | -0.0338 | 3.41 | -- | -- | -- | -- |
| 46.07 | 0.316 | 12.4 | -- | -- | 0.795 | -- | -- | 0.0624 | -- | 28.21 | 244 | -- | -- |
| 82.93 | 0.425 | 12.4 | -- | -- | -- | -- | -- | -0.0149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.85 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 18 |
| 6 | 24.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 10 | 24.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 15 |
| 11 | 24.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 20 | 24.54 | temperature | 25 | 30 | > th | dose dependent | sin | 17 | NA |
| 29 | 24.61 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 37 | 24.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 41 | 24.74 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 49 | 24.81 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 12 |
| 59 | 24.86 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 14 |
| 95 | 24.96 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 10 |
| 103 | 24.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 116 | 25.03 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 21 |
| 150 | 25.12 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 164 | 25.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 174 | 25.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 177 | 25.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 187 | 25.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 193 | 25.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 234 | 25.28 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 236 | 25.28 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 241 | 25.29 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 252 | 25.29 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 259 | 25.30 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 261 | 25.30 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 281 | 25.34 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 296 | 25.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 315 | 25.36 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 15 |
| 360 | 25.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 367 | 25.41 | humidity | 90 | 30 | < th | dose dependent | rect. | 12 | 7 |
| 407 | 25.44 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 412 | 25.44 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 424 | 25.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 464 | 25.49 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 474 | 25.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 481 | 25.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 494 | 25.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 498 | 25.53 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 543 | 25.56 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 544 | 25.56 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 559 | 25.56 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 570 | 25.57 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 576 | 25.58 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 20 |
| 577 | 25.58 | radiation | 1 | 270 | > th | dose dependent | sin | 17 | NA |
| 583 | 25.59 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 591 | 25.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 616 | 25.61 | radiation | 10 | 90 | < th | dose dependent | sin | 15 | NA |
| 651 | 25.63 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 675 | 25.64 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 12 |
| 677 | 25.64 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 696 | 25.65 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 735 | 25.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 761 | 25.68 | humidity | 80 | 90 | < th | dose independent | rect. | 12 | 6 |
| 778 | 25.68 | temperature | 25 | 1440 | > th | dose dependent | sin | 0 | NA |
| 864 | 25.73 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 948 | 25.76 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 998 | 25.78 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 20 |