Os04g0451900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os04g0451900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.14 | 0.301 | 10.7 | 0.503 | 0.429 | -0.799 | -0.587 | -1.11 | 0.23 | 23 | 20.34 | 8 | -- | -- |
| 41.91 | 0.302 | 10.7 | 0.713 | 0.424 | -0.882 | -0.281 | -- | 0.288 | 22.6 | 20.94 | 10 | -- | -- |
| 42.11 | 0.305 | 10.7 | 0.64 | 0.425 | -0.865 | -- | -0.468 | 0.267 | 22.5 | 20.87 | 7 | -- | -- |
| 42.28 | 0.303 | 10.7 | 0.722 | 0.426 | -0.89 | -- | -- | 0.293 | 22.4 | 21 | 10 | -- | -- |
| 51.77 | 0.337 | 10.7 | 0.717 | -- | -1.12 | -- | -0.332 | 0.316 | -- | 20.4 | 4 | -- | -- |
| 54.13 | 0.345 | 10.7 | 0.526 | 0.657 | -- | -0.254 | -- | 0.141 | 0.203 | -- | -- | -- | -- |
| 54.41 | 0.345 | 10.7 | 0.536 | 0.658 | -- | -- | -- | 0.142 | 0.184 | -- | -- | -- | -- |
| 51.87 | 0.337 | 10.7 | 0.772 | -- | -1.14 | -- | -- | 0.332 | -- | 20.56 | 2 | -- | -- |
| 54.96 | 0.347 | 10.7 | -- | 0.48 | -0.656 | -- | -- | 0.175 | 23.1 | 21.56 | 6 | -- | -- |
| 81.62 | 0.422 | 10.7 | 0.558 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 62 | 0.368 | 10.7 | -- | 0.665 | -- | -- | -- | 0.0825 | 0.228 | -- | -- | -- | -- |
| 66.92 | 0.382 | 10.7 | -- | -- | -0.974 | -- | -- | 0.223 | -- | 20.91 | 2 | -- | -- |
| 89.83 | 0.442 | 10.7 | -- | -- | -- | -- | -- | 0.0902 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.31 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 4 | 39.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 6 | 40.00 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 7 | 40.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 8 | 40.02 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 9 | 40.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 14 | 40.20 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 17 | 40.23 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 19 | 40.24 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 22 | 40.28 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 23 | 40.28 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 24 | 40.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 27 | 40.31 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 30 | 40.33 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 32 | 40.34 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 38 | 40.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 89 | 40.57 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 90 | 40.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 93 | 40.58 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 120 | 40.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 142 | 40.69 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 149 | 40.69 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 181 | 40.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 195 | 40.78 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 204 | 40.79 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 241 | 40.86 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 243 | 40.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 246 | 40.87 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 320 | 40.93 | temperature | 20 | 4320 | > th | dose dependent | sin | 10 | NA |
| 334 | 40.94 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 351 | 40.96 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 6 |
| 365 | 40.98 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 401 | 41.01 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 524 | 41.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 549 | 41.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 685 | 41.18 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 855 | 41.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 878 | 41.32 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 904 | 41.34 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 911 | 41.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 21 |