Os04g0451700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0451700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 187.27 | 0.643 | 2.85 | 0.282 | 0.183 | -2.86 | -0.286 | -4.05 | 0.272 | 0.946 | 8.012 | 324 | -- | -- |
| 187.84 | 0.638 | 2.83 | 0.245 | 0.185 | -1.95 | -0.238 | -- | 0.277 | 1.24 | 8.1 | 361 | -- | -- |
| 184.23 | 0.637 | 2.85 | 0.136 | 0.215 | -1.85 | -- | -3.48 | 0.242 | 0.899 | 8 | 324 | -- | -- |
| 188.23 | 0.639 | 2.83 | 0.247 | 0.184 | -1.94 | -- | -- | 0.278 | 1.5 | 8.1 | 361 | -- | -- |
| 186.89 | 0.64 | 2.85 | 0.143 | -- | -1.74 | -- | -3.43 | 0.243 | -- | 7.829 | 533 | -- | -- |
| 200.79 | 0.664 | 2.85 | 0.0406 | 0.142 | -- | -0.632 | -- | 0.208 | 21.3 | -- | -- | -- | -- |
| 201.8 | 0.665 | 2.84 | 0.0598 | 0.163 | -- | -- | -- | 0.207 | 23.5 | -- | -- | -- | -- |
| 189.46 | 0.641 | 2.82 | 0.24 | -- | -1.81 | -- | -- | 0.281 | -- | 8.3 | 533 | -- | -- |
| 189.73 | 0.642 | 2.83 | -- | 0.184 | -1.77 | -- | -- | 0.256 | 1.44 | 8.059 | 361 | -- | -- |
| 203.46 | 0.667 | 2.84 | 0.0642 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 201.9 | 0.665 | 2.85 | -- | 0.163 | -- | -- | -- | 0.2 | 23.5 | -- | -- | -- | -- |
| 190.71 | 0.643 | 2.83 | -- | -- | -1.79 | -- | -- | 0.243 | -- | 8.702 | 534 | -- | -- |
| 203.57 | 0.666 | 2.84 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.56 | wind | 9 | 30 | < th | dose independent | sin | 15 | NA |
| 4 | 181.75 | wind | 7 | 10 | > th | dose dependent | rect. | 15 | 12 |
| 30 | 182.12 | wind | 7 | 10 | > th | dose dependent | rect. | 15 | 7 |
| 44 | 182.49 | wind | 7 | 30 | > th | dose dependent | rect. | 15 | 5 |
| 88 | 183.98 | wind | 7 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 92 | 184.10 | wind | 7 | 90 | > th | dose dependent | sin | 14 | NA |
| 111 | 184.67 | wind | 7 | 10 | > th | dose independent | rect. | 15 | 1 |
| 112 | 184.75 | wind | 7 | 10 | > th | dose dependent | sin | 15 | NA |
| 115 | 184.87 | wind | 9 | 90 | > th | dose independent | sin | 12 | NA |
| 143 | 185.24 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 12 |
| 172 | 185.52 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 9 |
| 268 | 186.09 | wind | 9 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 335 | 186.78 | wind | 7 | 720 | < th | dose independent | rect. | 6 | 11 |
| 340 | 186.81 | wind | 9 | 720 | > th | dose independent | rect. | 15 | 1 |
| 351 | 186.89 | wind | 7 | 720 | < th | dose independent | rect. | 5 | 13 |
| 385 | 187.02 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 4 |
| 407 | 187.16 | wind | 7 | 720 | < th | dose independent | rect. | 21 | 20 |
| 409 | 187.18 | wind | 9 | 720 | < th | dose independent | rect. | 5 | 23 |
| 462 | 187.61 | wind | 7 | 720 | < th | dose independent | rect. | 5 | 21 |
| 489 | 187.83 | wind | 7 | 720 | < th | dose independent | rect. | 6 | 19 |
| 530 | 188.12 | wind | 7 | 10 | > th | dose independent | rect. | 15 | 12 |
| 557 | 188.20 | wind | 7 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 571 | 188.31 | wind | 7 | 270 | < th | dose independent | rect. | 14 | 11 |
| 575 | 188.32 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 9 |
| 656 | 188.43 | wind | 9 | 720 | < th | dose independent | sin | 22 | NA |
| 716 | 188.49 | wind | 7 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 725 | 188.51 | wind | 7 | 270 | > th | dose dependent | no | NA | NA |
| 731 | 188.54 | wind | 7 | 10 | > th | dose independent | rect. | 15 | 7 |
| 789 | 188.68 | wind | 9 | 720 | > th | dose dependent | rect. | 9 | 8 |
| 798 | 188.68 | wind | 9 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 813 | 188.73 | wind | 9 | 90 | > th | dose dependent | rect. | 17 | 6 |
| 843 | 188.82 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 6 |
| 920 | 188.92 | wind | 7 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 934 | 188.97 | wind | 9 | 720 | > th | dose independent | rect. | 22 | 19 |
| 938 | 188.98 | wind | 9 | 720 | > th | dose independent | rect. | 9 | 8 |