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Os04g0450200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pentatricopeptide repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.52 (0.0271) R2 : 0.0403
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.249 (0.057) R2dN8 : 0.052 R2N8 : 0.0403
σ : 0.509
deviance : 119.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.2 0.434 7.52 0.553 0.859 0.495 -0.622 0.171 -0.185 1.06 16.94 10 -- --
85.29 0.43 7.52 0.554 0.858 0.496 -0.732 -- -0.191 1.02 16.94 9 -- --
85.9 0.432 7.51 0.552 0.88 0.51 -- 0.568 -0.187 1.01 16.87 8 -- --
87.66 0.436 7.52 0.579 0.88 0.521 -- -- -0.181 1 16.86 8 -- --
106.47 0.481 7.5 0.63 -- 0.0127 -- 0.83 -0.165 -- 39.15 6 -- --
94.03 0.455 7.51 0.588 0.433 -- -0.905 -- -0.194 1.81 -- -- -- --
97.23 0.462 7.51 0.616 0.432 -- -- -- -0.189 1.82 -- -- -- --
105.18 0.478 7.51 0.65 -- -0.583 -- -- -0.154 -- 66.34 26 -- --
96.48 0.457 7.53 -- 0.909 0.544 -- -- -0.242 1.01 16.38 8 -- --
108.55 0.487 7.5 0.634 -- -- -- -- -0.179 -- -- -- -- --
107.23 0.484 7.52 -- 0.444 -- -- -- -0.257 1.86 -- -- -- --
108.15 0.484 7.53 -- -- -1.39 -- -- -0.296 -- 65.08 627 -- --
119.14 0.509 7.52 -- -- -- -- -- -0.249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.41 temperature 10.0 270 > th dose dependent rect. 6 8
14 75.07 temperature 15.0 10 > th dose dependent rect. 8 8
56 76.84 temperature 10.0 270 > th dose dependent rect. 19 18
60 77.11 wind 9.0 270 < th dose dependent rect. 7 7
61 77.14 wind 7.0 270 < th dose independent rect. 7 7
62 77.17 temperature 25.0 90 > th dose dependent rect. 20 19
76 77.73 precipitation 0.1 270 < th dose independent rect. 14 17
77 77.73 precipitation 0.1 270 < th dose dependent rect. 14 17
79 77.77 temperature 25.0 90 > th dose dependent rect. 24 15
87 77.88 temperature 25.0 90 > th dose dependent rect. 3 12
103 78.02 humidity 50.0 270 > th dose independent rect. 7 7
109 78.10 temperature 25.0 270 < th dose independent rect. 2 7
121 78.23 temperature 15.0 270 > th dose independent rect. 19 18
124 78.25 temperature 15.0 270 > th dose independent rect. 7 7
131 78.28 temperature 15.0 270 > th dose independent rect. 19 7
138 78.35 radiation 1.0 270 > th dose independent rect. 7 7
139 78.35 precipitation 0.1 270 < th dose independent rect. 7 7
140 78.35 precipitation 0.1 270 < th dose dependent rect. 7 7
154 78.46 atmosphere 995.0 270 > th dose independent rect. 7 7
155 78.46 atmosphere 1015.0 270 < th dose independent rect. 7 7
156 78.46 temperature 10.0 270 > th dose independent rect. 14 17
181 78.62 wind 9.0 270 < th dose independent rect. 14 17
185 78.66 atmosphere 995.0 270 > th dose independent rect. 14 17
193 78.76 radiation 40.0 270 < th dose independent rect. 14 17
200 78.84 temperature 10.0 10 > th dose dependent rect. 20 20
208 78.93 atmosphere 995.0 90 > th dose dependent rect. 15 17
215 78.96 temperature 25.0 270 > th dose independent rect. 7 6
225 79.02 atmosphere 995.0 270 > th dose dependent rect. 24 8
240 79.13 temperature 25.0 270 > th dose independent rect. 2 11
250 79.19 precipitation 0.1 270 < th dose independent rect. 3 15
251 79.19 precipitation 0.1 270 < th dose dependent rect. 3 15
272 79.39 radiation 1.0 270 < th dose dependent rect. 18 9
278 79.43 humidity 50.0 90 > th dose independent rect. 9 6
284 79.45 humidity 50.0 270 > th dose independent rect. 18 9
286 79.45 radiation 20.0 270 < th dose independent rect. 18 9
289 79.45 temperature 10.0 270 > th dose independent rect. 3 15
290 79.45 atmosphere 1015.0 270 < th dose independent rect. 3 15
293 79.46 atmosphere 995.0 270 > th dose independent rect. 18 9
294 79.46 radiation 30.0 270 < th dose dependent rect. 18 9
307 79.51 atmosphere 995.0 10 > th dose dependent rect. 16 17
312 79.53 wind 9.0 270 < th dose independent rect. 18 9
313 79.53 radiation 1.0 270 < th dose independent rect. 18 9
314 79.53 wind 1.0 270 > th dose independent rect. 14 16
332 79.59 atmosphere 995.0 270 > th dose independent rect. 2 16
333 79.59 wind 9.0 270 < th dose independent rect. 17 22
360 79.69 temperature 30.0 270 < th dose independent rect. 18 8
363 79.71 temperature 15.0 90 > th dose independent rect. 9 6
380 79.77 wind 9.0 270 < th dose independent rect. 19 19
384 79.80 wind 1.0 270 > th dose independent rect. 7 7
387 79.81 precipitation 0.1 90 < th dose independent rect. 9 6
389 79.81 precipitation 0.1 90 < th dose dependent rect. 9 6
410 79.87 atmosphere 1015.0 90 < th dose independent rect. 9 6
423 79.91 atmosphere 1015.0 270 < th dose independent rect. 14 17
435 79.94 atmosphere 1005.0 270 > th dose independent rect. 1 6
461 80.02 radiation 1.0 270 > th dose independent rect. 14 16
462 80.02 humidity 50.0 270 > th dose independent rect. 19 18
463 80.02 temperature 25.0 90 > th dose dependent sin 4 NA
477 80.06 radiation 40.0 90 < th dose dependent rect. 4 15
508 80.13 atmosphere 995.0 90 > th dose dependent rect. 15 4
509 80.13 atmosphere 1000.0 10 > th dose dependent rect. 2 8
511 80.14 wind 1.0 270 > th dose independent rect. 13 6
512 80.14 wind 9.0 10 < th dose independent rect. 8 8
520 80.16 precipitation 0.1 270 < th dose independent rect. 18 8
522 80.16 precipitation 0.1 270 < th dose dependent rect. 18 8
526 80.17 radiation 40.0 90 < th dose dependent rect. 15 4
529 80.18 atmosphere 995.0 90 > th dose independent rect. 9 6
532 80.19 precipitation 0.1 270 < th dose independent rect. 14 5
534 80.19 precipitation 0.1 270 < th dose dependent rect. 14 5
536 80.20 atmosphere 995.0 90 > th dose independent rect. 15 4
543 80.21 atmosphere 995.0 270 > th dose independent rect. 15 2
553 80.22 radiation 30.0 90 < th dose independent rect. 15 4
565 80.26 precipitation 0.1 270 < th dose independent rect. 15 2
566 80.26 atmosphere 995.0 270 > th dose independent rect. 13 6
567 80.26 precipitation 0.1 270 < th dose dependent rect. 15 2
574 80.28 temperature 10.0 270 > th dose independent rect. 13 6
576 80.28 atmosphere 1010.0 270 < th dose independent rect. 13 6
579 80.28 atmosphere 995.0 270 > th dose independent rect. 19 18
603 80.33 temperature 10.0 270 > th dose independent rect. 15 2
605 80.33 atmosphere 1010.0 270 < th dose independent rect. 15 2
607 80.33 temperature 10.0 270 > th dose independent rect. 17 22
662 80.39 radiation 1.0 10 > th dose independent rect. 8 8
672 80.41 wind 1.0 90 > th dose independent rect. 9 6
695 80.45 atmosphere 995.0 10 > th dose independent rect. 16 16
699 80.47 wind 9.0 270 < th dose independent rect. 14 5
707 80.48 wind 1.0 270 > th dose independent rect. 15 2
710 80.49 precipitation 0.1 10 < th dose independent rect. 16 16
711 80.49 temperature 15.0 270 > th dose independent rect. 8 17
713 80.49 atmosphere 995.0 270 > th dose dependent rect. 15 2
714 80.49 precipitation 0.1 10 < th dose dependent rect. 16 16
731 80.55 temperature 10.0 10 > th dose independent rect. 8 8
733 80.55 atmosphere 1015.0 10 < th dose independent rect. 8 8
734 80.55 precipitation 0.1 10 < th dose independent rect. 8 8
735 80.55 temperature 10.0 10 > th dose independent rect. 16 16
736 80.55 precipitation 0.1 10 < th dose dependent rect. 8 8
751 80.58 wind 9.0 270 < th dose independent rect. 2 16
755 80.59 wind 9.0 270 < th dose independent rect. 15 2
767 80.61 humidity 50.0 270 > th dose independent rect. 17 22
785 80.64 radiation 1.0 90 < th dose dependent sin 12 NA
811 80.72 radiation 40.0 90 < th dose dependent rect. 15 18
813 80.73 temperature 25.0 270 > th dose dependent sin 7 NA
816 80.74 humidity 90.0 270 < th dose independent rect. 15 2
819 80.75 radiation 40.0 270 < th dose independent rect. 15 2
820 80.75 humidity 90.0 90 < th dose independent rect. 15 4
826 80.76 precipitation 0.1 270 < th dose independent rect. 19 18
827 80.76 precipitation 0.1 270 < th dose dependent rect. 19 18
849 80.80 radiation 20.0 10 < th dose independent rect. 4 16
855 80.82 humidity 50.0 90 > th dose independent rect. 15 4
875 80.86 humidity 90.0 90 < th dose independent rect. 9 6
882 80.87 atmosphere 995.0 270 > th dose dependent rect. 13 6
893 80.90 humidity 50.0 90 > th dose independent rect. 15 18
901 80.91 radiation 30.0 90 < th dose independent rect. 4 15
912 80.93 humidity 50.0 10 > th dose independent rect. 16 16
953 81.01 radiation 20.0 10 < th dose dependent rect. 5 15