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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0449100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Xyloglucan fucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.019) R2 : 0.0121
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0945 (0.04) R2dN8 : 0.0156 R2N8 : 0.0121
σ : 0.358
deviance : 58.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.39 0.356 2.85 0.0535 0.124 -0.345 0.113 0.209 0.125 14.5 40.18 275 -- --
57.42 0.353 2.85 0.0505 0.12 -0.333 0.132 -- 0.122 14.4 40.44 277 -- --
57.43 0.353 2.85 0.0569 0.123 -0.346 -- 0.326 0.125 14.5 40.17 277 -- --
57.51 0.353 2.85 0.0557 0.122 -0.342 -- -- 0.125 14.6 40.44 276 -- --
58.05 0.355 2.85 0.0483 -- -0.204 -- 0.29 0.115 -- 40.44 278 -- --
58.53 0.359 2.86 0.0382 0.027 -- 0.164 -- 0.0989 13.4 -- -- -- --
58.64 0.359 2.86 0.0438 0.0278 -- -- -- 0.0999 14.2 -- -- -- --
58.11 0.355 2.85 0.0465 -- -0.205 -- -- 0.112 -- 40.69 279 -- --
57.58 0.353 2.85 -- 0.122 -0.342 -- -- 0.118 14.6 40.68 275 -- --
58.68 0.358 2.86 0.0427 -- -- -- -- 0.0992 -- -- -- -- --
58.69 0.358 2.86 -- 0.027 -- -- -- 0.095 14.2 -- -- -- --
58.16 0.355 2.85 -- -- -0.202 -- -- 0.107 -- 40.68 273 -- --
58.73 0.358 2.86 -- -- -- -- -- 0.0945 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.69 humidity 70.0 30 > th dose independent rect. 18 1
2 55.75 temperature 30.0 30 < th dose independent rect. 18 1
3 55.76 atmosphere 1005.0 30 > th dose dependent rect. 18 1
4 55.80 temperature 30.0 30 < th dose dependent rect. 18 1
5 55.80 humidity 70.0 30 > th dose dependent rect. 18 1
7 55.85 atmosphere 1005.0 30 > th dose dependent rect. 18 3
19 56.34 temperature 25.0 30 > th dose dependent rect. 18 3
23 56.37 temperature 25.0 30 > th dose independent rect. 18 3
30 56.46 radiation 20.0 4320 < th dose dependent rect. 21 1
39 56.49 temperature 10.0 1440 > th dose independent rect. 21 1
42 56.49 temperature 30.0 1440 < th dose independent rect. 21 1
46 56.49 humidity 50.0 1440 > th dose independent rect. 21 1
52 56.49 atmosphere 995.0 1440 > th dose independent rect. 21 1
53 56.49 radiation 1.0 1440 < th dose independent rect. 21 1
74 56.49 temperature 10.0 1440 > th dose independent rect. 22 23
77 56.49 atmosphere 1005.0 30 > th dose dependent rect. 20 1
81 56.50 temperature 25.0 30 > th dose independent rect. 20 1
82 56.50 humidity 90.0 30 < th dose independent rect. 20 1
83 56.50 atmosphere 1005.0 30 > th dose independent rect. 20 1
84 56.50 temperature 20.0 30 > th dose dependent rect. 20 1
88 56.51 wind 3.0 30 > th dose independent rect. 20 1
89 56.51 temperature 10.0 30 > th dose dependent rect. 20 1
96 56.52 wind 5.0 30 < th dose independent rect. 20 1
99 56.52 temperature 10.0 30 > th dose independent rect. 20 1
102 56.52 temperature 30.0 30 < th dose independent rect. 20 1
103 56.52 humidity 50.0 30 > th dose independent rect. 20 1
107 56.52 atmosphere 995.0 30 > th dose independent rect. 20 1
109 56.52 atmosphere 1010.0 30 < th dose independent rect. 20 1
111 56.52 radiation 1.0 30 < th dose independent rect. 20 1
116 56.52 precipitation 0.1 30 < th dose independent rect. 20 1
117 56.52 temperature 10.0 30 > th dose independent rect. 21 23
118 56.52 radiation 1.0 30 < th dose dependent rect. 20 1
124 56.52 precipitation 0.1 30 < th dose dependent rect. 20 1
125 56.53 wind 1.0 30 > th dose dependent rect. 20 1
126 56.53 wind 9.0 30 < th dose dependent rect. 20 1
127 56.53 humidity 50.0 30 > th dose dependent rect. 20 1
134 56.56 radiation 10.0 10 > th dose independent rect. 6 1
160 56.56 humidity 90.0 30 < th dose dependent rect. 20 1
161 56.56 radiation 10.0 10 > th dose dependent rect. 6 1
190 56.58 atmosphere 1015.0 30 < th dose dependent rect. 20 1
194 56.62 temperature 30.0 30 < th dose independent rect. 21 23
200 56.66 temperature 30.0 30 < th dose dependent rect. 20 1
259 56.84 atmosphere 1005.0 30 > th dose independent rect. 18 3
261 56.86 wind 9.0 30 < th dose independent rect. 21 23
271 56.93 atmosphere 995.0 30 > th dose independent rect. 21 23
278 56.96 atmosphere 1005.0 270 > th dose independent rect. 17 2
279 56.96 precipitation 0.1 30 < th dose independent rect. 21 23
280 56.96 precipitation 0.1 30 < th dose dependent rect. 21 23
286 57.00 temperature 30.0 90 > th dose independent rect. 11 1
293 57.03 temperature 30.0 10 > th dose independent rect. 11 1
297 57.04 wind 3.0 10 > th dose independent rect. 18 3
303 57.05 humidity 90.0 30 < th dose independent rect. 18 3
305 57.05 temperature 25.0 10 > th dose dependent rect. 18 13
309 57.06 temperature 30.0 10 > th dose dependent rect. 11 1
311 57.07 temperature 30.0 30 < th dose independent rect. 19 23
318 57.09 radiation 1.0 30 < th dose dependent rect. 18 1
323 57.11 wind 3.0 10 < th dose dependent rect. 6 1
327 57.12 humidity 70.0 30 > th dose independent rect. 18 3
332 57.13 radiation 1.0 270 > th dose independent rect. 17 1
335 57.13 wind 5.0 30 > th dose dependent rect. 18 1
393 57.15 atmosphere 1005.0 10 > th dose dependent rect. 6 1
400 57.17 radiation 40.0 270 < th dose independent rect. 9 12
401 57.17 radiation 40.0 270 > th dose independent rect. 12 22
409 57.18 temperature 25.0 270 > th dose dependent rect. 18 1
413 57.19 radiation 1.0 30 < th dose independent rect. 18 1
414 57.19 wind 5.0 30 < th dose independent rect. 18 3
416 57.19 radiation 40.0 90 < th dose independent rect. 17 20
453 57.23 temperature 30.0 30 < th dose independent rect. 21 21
457 57.24 wind 1.0 30 > th dose independent rect. 12 6
458 57.24 humidity 70.0 30 > th dose independent rect. 18 13
462 57.24 humidity 80.0 30 > th dose dependent rect. 6 1
476 57.26 radiation 40.0 270 > th dose independent sin 18 NA
478 57.26 atmosphere 1010.0 10 < th dose independent rect. 21 21
514 57.28 atmosphere 1005.0 30 > th dose independent rect. 18 1
537 57.29 temperature 30.0 30 < th dose independent rect. 18 3
543 57.29 radiation 1.0 14400 < th dose dependent rect. 19 1
546 57.29 atmosphere 995.0 10 > th dose dependent rect. 18 14
547 57.29 radiation 40.0 90 < th dose dependent rect. 17 19
548 57.30 wind 3.0 30 > th dose independent rect. 18 1
549 57.30 temperature 10.0 1440 > th dose independent rect. 19 1
552 57.30 temperature 30.0 1440 < th dose independent rect. 19 1
556 57.30 humidity 50.0 1440 > th dose independent rect. 19 1
558 57.30 atmosphere 995.0 1440 > th dose independent rect. 19 1
563 57.30 radiation 1.0 1440 < th dose independent rect. 19 1
594 57.30 temperature 30.0 30 < th dose independent rect. 18 13
595 57.30 atmosphere 1010.0 10 < th dose independent rect. 24 18
596 57.30 temperature 10.0 1440 > th dose independent rect. 20 23
599 57.30 temperature 30.0 30 < th dose independent rect. 7 23
601 57.30 radiation 1.0 1440 < th dose dependent rect. 19 1
620 57.30 radiation 10.0 43200 < th dose dependent rect. 19 3
625 57.31 temperature 10.0 1440 > th dose independent rect. 19 3
628 57.31 temperature 30.0 1440 < th dose independent rect. 19 3
632 57.31 humidity 50.0 1440 > th dose independent rect. 19 3
634 57.31 atmosphere 995.0 1440 > th dose independent rect. 19 3
635 57.31 radiation 1.0 1440 < th dose independent rect. 19 3
659 57.31 temperature 10.0 1440 > th dose independent rect. 22 21
664 57.31 radiation 1.0 1440 < th dose dependent rect. 19 3
683 57.32 wind 7.0 30 < th dose independent rect. 18 1
685 57.32 temperature 10.0 1440 > th dose independent rect. 13 6
689 57.32 temperature 10.0 1440 > th dose independent rect. 8 11
692 57.32 temperature 10.0 1440 > th dose independent rect. 19 13
695 57.32 temperature 30.0 1440 < th dose independent rect. 19 13
699 57.32 humidity 50.0 1440 > th dose independent rect. 19 13
701 57.32 atmosphere 995.0 1440 > th dose independent rect. 19 13
704 57.32 temperature 10.0 1440 > th dose independent rect. 19 18
707 57.32 atmosphere 995.0 1440 > th dose independent rect. 19 18
709 57.32 temperature 30.0 30 < th dose dependent rect. 6 1
720 57.33 humidity 80.0 30 < th dose independent rect. 18 1
724 57.33 atmosphere 995.0 30 > th dose independent rect. 19 23
734 57.34 temperature 10.0 30 > th dose independent rect. 18 1
739 57.34 atmosphere 995.0 30 > th dose independent rect. 18 1
741 57.34 atmosphere 1010.0 30 < th dose independent rect. 18 1
746 57.34 precipitation 0.1 30 < th dose independent rect. 18 1
750 57.34 wind 3.0 30 > th dose independent rect. 18 18
752 57.34 temperature 10.0 30 > th dose independent rect. 19 23
754 57.34 radiation 10.0 10 < th dose dependent rect. 6 1
755 57.34 precipitation 0.1 30 < th dose dependent rect. 18 1
761 57.35 temperature 30.0 30 < th dose independent rect. 8 10
763 57.35 precipitation 0.1 30 < th dose independent rect. 19 23
764 57.35 temperature 10.0 30 > th dose dependent rect. 12 6
765 57.35 precipitation 0.1 30 < th dose dependent rect. 19 23
772 57.36 radiation 40.0 270 < th dose independent rect. 15 22
773 57.36 wind 9.0 30 < th dose dependent rect. 18 1
794 57.38 radiation 40.0 270 < th dose independent sin 17 NA
801 57.38 radiation 40.0 270 > th dose independent rect. 11 4
832 57.38 radiation 1.0 30 < th dose dependent rect. 18 3
835 57.38 temperature 10.0 30 > th dose dependent rect. 18 13
839 57.39 radiation 40.0 270 > th dose independent rect. 9 6
843 57.39 wind 1.0 10 > th dose independent rect. 8 10
864 57.39 precipitation 0.1 30 < th dose independent rect. 18 18
871 57.39 wind 9.0 30 < th dose independent rect. 19 23
873 57.39 temperature 30.0 10 > th dose dependent sin 7 NA
876 57.39 humidity 50.0 30 > th dose dependent rect. 18 3
881 57.39 precipitation 0.1 30 < th dose dependent rect. 18 18
882 57.40 radiation 40.0 270 > th dose independent no NA NA
888 57.40 radiation 1.0 30 < th dose independent rect. 18 3
890 57.40 wind 7.0 30 < th dose independent rect. 12 6
892 57.40 atmosphere 995.0 30 > th dose independent rect. 12 6