Os04g0448500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os04g0448500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.03 | 0.42 | 3.42 | 1.24 | 0.0179 | 1.53 | 0.978 | 1.94 | 0.252 | 18.4 | 24.21 | 5417 | -- | -- |
| 82.63 | 0.423 | 3.37 | 1.44 | 0.024 | 1.1 | 0.863 | -- | 0.281 | 18 | 29.48 | 5421 | -- | -- |
| 82.13 | 0.422 | 3.44 | 1.24 | 0.00361 | 1.73 | -- | 2.44 | 0.253 | 19.2 | 23.38 | 5511 | -- | -- |
| 84.78 | 0.429 | 3.37 | 1.44 | 0.0564 | 1.08 | -- | -- | 0.281 | 14.5 | 28.15 | 5402 | -- | -- |
| 82.13 | 0.422 | 3.44 | 1.24 | -- | 1.74 | -- | 2.45 | 0.254 | -- | 23.36 | 5503 | -- | -- |
| 101.01 | 0.471 | 3.43 | 0.919 | 0.0469 | -- | 0.956 | -- | 0.021 | 17.9 | -- | -- | -- | -- |
| 102.67 | 0.475 | 3.42 | 0.914 | 0.109 | -- | -- | -- | 0.026 | 13.8 | -- | -- | -- | -- |
| 84.96 | 0.429 | 3.37 | 1.44 | -- | 1.08 | -- | -- | 0.275 | -- | 28.87 | 5392 | -- | -- |
| 120.99 | 0.512 | 3.43 | -- | 0.087 | 0.435 | -- | -- | -0.0106 | 14 | 56.91 | 1849 | -- | -- |
| 103.39 | 0.475 | 3.42 | 0.91 | -- | -- | -- | -- | 0.0235 | -- | -- | -- | -- | -- |
| 124.71 | 0.522 | 3.45 | -- | 0.0922 | -- | -- | -- | -0.0758 | 13.6 | -- | -- | -- | -- |
| 121.3 | 0.513 | 3.43 | -- | -- | 0.414 | -- | -- | -0.0115 | -- | 52.29 | 2238 | -- | -- |
| 125.23 | 0.522 | 3.45 | -- | -- | -- | -- | -- | -0.0774 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.52 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 3 | 78.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 6 | 78.76 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 7 | 78.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 8 | 78.80 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 25 | 78.90 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 31 | 78.92 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 58 | 78.96 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 90 | 79.02 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 111 | 79.04 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 140 | 79.06 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 18 | NA |
| 167 | 79.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 168 | 79.07 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 16 | NA |
| 200 | 79.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 307 | 79.11 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 14 | 19 |
| 325 | 79.12 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 387 | 79.12 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 388 | 79.12 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 589 | 79.18 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 590 | 79.18 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 627 | 79.19 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 651 | 79.20 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 656 | 79.20 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 7 | NA |
| 660 | 79.20 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 693 | 79.21 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 773 | 79.23 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 23 | NA |
| 827 | 79.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 881 | 79.25 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 882 | 79.25 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 917 | 79.26 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 23 | NA |
| 949 | 79.26 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 1 | 8 |
| 993 | 79.27 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 3 | 6 |