Os04g0448000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0448000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 263.44 | 0.763 | 7.04 | 4.57 | 1.76 | -3.63 | 0.795 | -5.13 | 0.96 | 7.41 | 0.6499 | 4371 | -- | -- |
| 272.45 | 0.769 | 7.18 | 3.79 | 1.78 | -3.46 | 1.04 | -- | 0.79 | 7.3 | 0.9162 | 2928 | -- | -- |
| 264.53 | 0.758 | 7.05 | 4.61 | 1.76 | -3.67 | -- | -5.35 | 0.941 | 7.28 | 0.6 | 4382 | -- | -- |
| 274.11 | 0.771 | 7.17 | 3.83 | 1.78 | -3.46 | -- | -- | 0.797 | 7.26 | 1.06 | 2928 | -- | -- |
| 428.33 | 0.964 | 7.09 | 4.59 | -- | -3.79 | -- | -5.27 | 0.977 | -- | 0.6001 | 4389 | -- | -- |
| 404.78 | 0.943 | 7.04 | 4.6 | 1.85 | -- | 1.06 | -- | 1.32 | 7.78 | -- | -- | -- | -- |
| 407.92 | 0.946 | 7.04 | 4.63 | 1.86 | -- | -- | -- | 1.32 | 7.7 | -- | -- | -- | -- |
| 439.69 | 0.977 | 7.22 | 3.85 | -- | -3.69 | -- | -- | 0.789 | -- | 1.217 | 2942 | -- | -- |
| 293.23 | 0.798 | 7.38 | -- | 2.01 | -4.07 | -- | -- | -0.214 | 7.43 | 1.394e-05 | 46657 | -- | -- |
| 593.88 | 1.14 | 7.09 | 4.65 | -- | -- | -- | -- | 1.35 | -- | -- | -- | -- | -- |
| 972.07 | 1.46 | 7.16 | -- | 1.9 | -- | -- | -- | 0.805 | 7.53 | -- | -- | -- | -- |
| 484.56 | 1.03 | 7.46 | -- | -- | -4.07 | -- | -- | -0.289 | -- | 0.009919 | 47520 | -- | -- |
| 1164.44 | 1.59 | 7.21 | -- | -- | -- | -- | -- | 0.831 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 256.27 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 3 | 256.62 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 5 | 257.02 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 10 | 258.30 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 7 |
| 11 | 258.41 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 13 | 258.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 19 | 259.00 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 27 | 259.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 28 | 259.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 33 | 260.29 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 57 | 260.88 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 58 | 260.90 | radiation | 1 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 63 | 261.05 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 74 | 261.20 | radiation | 1 | 43200 | < th | dose dependent | sin | 16 | NA |
| 80 | 261.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 19 |
| 102 | 261.57 | temperature | 20 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 116 | 261.68 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 133 | 261.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 12 |
| 179 | 262.11 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 16 |
| 187 | 262.16 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 9 |
| 188 | 262.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 194 | 262.19 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 12 |
| 233 | 262.54 | radiation | 1 | 4320 | < th | dose dependent | rect. | 9 | 19 |
| 240 | 262.60 | radiation | 1 | 4320 | < th | dose dependent | rect. | 9 | 12 |
| 242 | 262.62 | radiation | 1 | 4320 | < th | dose dependent | rect. | 9 | 15 |
| 254 | 262.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 266 | 262.77 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 308 | 262.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 23 |
| 344 | 263.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 17 |
| 359 | 263.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 391 | 263.11 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 419 | 263.20 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 429 | 263.31 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 439 | 263.38 | radiation | 1 | 4320 | < th | dose dependent | sin | 18 | NA |
| 497 | 263.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 507 | 263.89 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 537 | 264.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 538 | 264.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 543 | 264.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 598 | 264.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 12 |
| 601 | 264.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 604 | 264.70 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 621 | 264.77 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 631 | 264.82 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 669 | 265.14 | radiation | 1 | 43200 | < th | dose independent | sin | 17 | NA |
| 722 | 265.47 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 733 | 265.48 | radiation | 1 | 4320 | < th | dose independent | rect. | 12 | 6 |
| 752 | 265.53 | radiation | 1 | 4320 | > th | dose independent | rect. | 12 | 6 |
| 771 | 265.60 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 775 | 265.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 780 | 265.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 783 | 265.62 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 9 |
| 803 | 265.65 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 15 |
| 851 | 265.85 | temperature | 10 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 905 | 266.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 920 | 266.08 | radiation | 1 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 930 | 266.14 | temperature | 20 | 14400 | < th | dose dependent | sin | 10 | NA |
| 954 | 266.20 | temperature | 10 | 14400 | > th | dose dependent | rect. | 2 | 3 |
| 977 | 266.25 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 10 | 1 |