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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0445000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Potassium channel SKOR (Stelar K(+) outward rectifying channel).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0334) R2 : 0.243
β1 : -1.43 (0.122) R2dD : 0.236 R2D : 0.182
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.374 (0.0713) R2dN8 : 0.0613 R2N8 : 0.00719
σ : 0.627
deviance : 180.04
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.68 0.584 3.37 -1.85 0.385 -0.257 -1.38 3.01 -0.528 5.57 6.166 1374 -- --
166.64 0.606 3.34 -1.46 0.417 -0.162 -1.41 -- -0.399 3.97 5.822 1446 -- --
159.31 0.588 3.36 -1.85 0.383 -0.254 -- 2.97 -0.516 5.79 6.083 1375 -- --
172.16 0.611 3.33 -1.46 0.365 -0.191 -- -- -0.417 5.32 7.701 1489 -- --
166.68 0.601 3.37 -1.84 -- -0.249 -- 2.93 -0.51 -- 6.054 1379 -- --
168 0.608 3.33 -1.45 0.364 -- -1.45 -- -0.391 4.86 -- -- -- --
172.99 0.616 3.33 -1.44 0.369 -- -- -- -0.383 5.73 -- -- -- --
178.98 0.623 3.33 -1.43 -- -0.207 -- -- -0.402 -- 6.911 1450 -- --
226.71 0.701 3.3 -- 0.543 -0.408 -- -- -0.272 5.37 10 2012 -- --
180.04 0.627 3.33 -1.43 -- -- -- -- -0.374 -- -- -- -- --
227.9 0.706 3.29 -- 0.346 -- -- -- -0.222 5.92 -- -- -- --
232.83 0.711 3.31 -- -- -0.234 -- -- -0.264 -- 10 2903 -- --
234.12 0.714 3.3 -- -- -- -- -- -0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 143.51 radiation 1.0 10 < th dose dependent rect. 6 2
7 145.14 radiation 1.0 10 < th dose independent rect. 6 2
11 145.27 temperature 20.0 90 < th dose independent rect. 4 1
14 147.73 atmosphere 1000.0 10 > th dose dependent rect. 5 1
19 149.83 temperature 30.0 10 < th dose dependent rect. 5 1
21 150.02 temperature 25.0 90 < th dose dependent rect. 4 1
26 150.60 atmosphere 1015.0 10 < th dose independent rect. 6 23
27 150.74 wind 1.0 30 > th dose independent rect. 5 1
31 151.10 radiation 1.0 90 > th dose independent rect. 4 1
41 151.10 radiation 1.0 90 > th dose dependent rect. 4 1
53 151.31 atmosphere 1005.0 10 > th dose independent rect. 5 1
55 151.40 radiation 10.0 10 < th dose dependent rect. 5 7
63 151.69 wind 5.0 10 < th dose independent rect. 5 1
68 151.82 precipitation 0.1 10 < th dose independent rect. 5 1
69 151.82 precipitation 0.1 10 < th dose dependent rect. 5 1
73 151.92 temperature 10.0 10 > th dose independent rect. 5 1
75 151.92 temperature 30.0 10 < th dose independent rect. 5 1
76 151.92 humidity 50.0 10 > th dose independent rect. 5 1
80 151.92 atmosphere 1010.0 10 < th dose independent rect. 5 1
82 151.92 radiation 20.0 10 < th dose independent rect. 5 1
85 151.92 temperature 10.0 10 > th dose independent rect. 6 23
90 152.09 radiation 40.0 10 < th dose dependent rect. 5 1
96 152.32 atmosphere 995.0 10 > th dose independent rect. 6 23
99 152.36 precipitation 0.1 10 < th dose independent rect. 6 23
100 152.36 wind 9.0 10 < th dose dependent rect. 5 1
101 152.36 precipitation 0.1 10 < th dose dependent rect. 6 23
135 152.83 humidity 50.0 30 > th dose independent rect. 6 23
165 153.57 humidity 80.0 1440 > th dose dependent rect. 12 3
166 153.63 humidity 50.0 10 > th dose dependent rect. 5 1
179 153.77 wind 9.0 10 < th dose independent rect. 6 23
188 153.93 humidity 70.0 720 > th dose dependent rect. 22 18
193 154.03 radiation 1.0 10 < th dose independent rect. 5 7
196 154.16 radiation 10.0 1440 < th dose dependent rect. 12 1
206 154.26 humidity 80.0 1440 > th dose dependent rect. 8 8
207 154.27 radiation 20.0 10 < th dose independent rect. 5 4
217 154.34 humidity 60.0 10 > th dose dependent rect. 5 4
231 154.42 humidity 70.0 10 > th dose independent rect. 5 4
234 154.44 temperature 30.0 10 < th dose independent rect. 6 23
236 154.47 temperature 20.0 10 > th dose independent rect. 21 8
237 154.49 radiation 40.0 43200 > th dose independent rect. 7 1
253 154.49 radiation 40.0 43200 > th dose dependent rect. 7 1
272 154.56 humidity 80.0 1440 > th dose dependent rect. 5 11
274 154.57 radiation 10.0 1440 < th dose dependent rect. 12 19
277 154.60 temperature 10.0 10 > th dose dependent rect. 5 1
323 154.80 radiation 10.0 720 < th dose independent rect. 15 3
325 154.82 humidity 80.0 1440 > th dose dependent sin 1 NA
332 154.85 wind 7.0 1440 < th dose independent rect. 6 1
334 154.85 temperature 10.0 1440 > th dose independent rect. 6 1
337 154.85 temperature 30.0 1440 < th dose independent rect. 6 1
341 154.85 humidity 50.0 1440 > th dose independent rect. 6 1
346 154.85 atmosphere 995.0 1440 > th dose independent rect. 6 1
347 154.85 atmosphere 1015.0 1440 < th dose independent rect. 6 1
348 154.85 radiation 40.0 1440 < th dose independent rect. 6 1
352 154.85 temperature 10.0 1440 > th dose independent rect. 7 23
373 154.95 radiation 10.0 1440 > th dose independent rect. 11 2
383 155.05 humidity 80.0 1440 > th dose dependent rect. 1 16
406 155.19 radiation 1.0 90 < th dose independent rect. 5 3
457 155.46 radiation 1.0 720 > th dose dependent rect. 18 11
461 155.48 radiation 1.0 90 < th dose independent rect. 5 7
462 155.49 humidity 90.0 10 < th dose independent rect. 5 1
485 155.62 radiation 1.0 720 > th dose dependent rect. 18 1
499 155.64 atmosphere 1015.0 10 < th dose independent rect. 9 20
507 155.68 humidity 60.0 43200 < th dose dependent rect. 6 2
524 155.79 radiation 10.0 1440 < th dose dependent rect. 9 11
530 155.80 radiation 10.0 1440 < th dose dependent rect. 9 16
535 155.81 humidity 70.0 10 > th dose dependent rect. 9 20
538 155.82 radiation 10.0 1440 < th dose dependent rect. 11 8
545 155.83 humidity 80.0 1440 > th dose independent rect. 12 2
585 155.92 radiation 10.0 1440 < th dose dependent sin 20 NA
593 155.96 humidity 80.0 1440 > th dose independent rect. 8 7
617 156.08 atmosphere 1015.0 10 < th dose independent rect. 21 8
650 156.15 wind 3.0 30 < th dose dependent rect. 9 20
660 156.20 humidity 80.0 1440 > th dose independent rect. 22 18
688 156.27 temperature 15.0 270 > th dose independent rect. 1 22
697 156.31 temperature 20.0 90 < th dose independent rect. 18 12
725 156.37 wind 3.0 30 < th dose dependent rect. 6 23
727 156.38 humidity 80.0 1440 > th dose independent rect. 8 11
732 156.40 radiation 1.0 1440 < th dose independent rect. 9 4
733 156.40 radiation 10.0 1440 < th dose dependent sin 15 NA
734 156.40 radiation 1.0 1440 < th dose dependent rect. 9 4
752 156.47 wind 3.0 720 < th dose independent rect. 23 2
753 156.47 temperature 20.0 90 < th dose independent rect. 23 7
758 156.48 wind 5.0 30 < th dose dependent rect. 22 7
761 156.49 humidity 80.0 1440 > th dose independent rect. 22 21
766 156.50 radiation 1.0 1440 > th dose independent rect. 9 4
775 156.53 radiation 10.0 10 < th dose dependent rect. 12 17
781 156.55 wind 1.0 270 > th dose independent rect. 16 14
803 156.61 humidity 80.0 1440 < th dose independent rect. 12 2
805 156.61 humidity 70.0 43200 < th dose dependent rect. 24 8
820 156.64 wind 5.0 720 < th dose dependent rect. 23 2
835 156.70 humidity 80.0 1440 > th dose independent sin 0 NA
836 156.70 radiation 10.0 720 < th dose independent rect. 15 10
870 156.77 humidity 60.0 10 > th dose dependent rect. 21 8
879 156.80 atmosphere 1015.0 10 < th dose dependent rect. 5 1
889 156.84 humidity 90.0 90 > th dose independent rect. 4 3
897 156.87 humidity 80.0 1440 > th dose independent rect. 5 14
901 156.88 humidity 70.0 43200 > th dose independent rect. 24 7
920 156.91 humidity 50.0 10 > th dose dependent rect. 17 12
927 156.93 atmosphere 1015.0 270 < th dose independent rect. 6 20
941 156.97 temperature 10.0 10 > th dose dependent rect. 21 8
943 156.97 wind 9.0 30 < th dose dependent rect. 6 23
944 156.98 humidity 70.0 43200 < th dose independent rect. 24 7
945 156.98 radiation 40.0 720 < th dose dependent rect. 15 3
950 156.99 atmosphere 995.0 14400 > th dose independent rect. 7 6
951 156.99 wind 3.0 30 < th dose independent rect. 6 23
962 157.02 atmosphere 1005.0 10 > th dose independent rect. 5 4
986 157.05 radiation 1.0 1440 < th dose dependent rect. 18 22
987 157.06 temperature 20.0 270 < th dose dependent rect. 2 1
993 157.08 radiation 1.0 1440 < th dose independent rect. 12 1
994 157.08 humidity 80.0 1440 > th dose independent rect. 4 12