FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0444300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.5 (0.072) R2 : 0.345
β1 : -0.618 (0.262) R2dD : 0.0095 R2D : 0.0124
β2 : 1.72 (0.175) R2dC : 0.134 R2C : 0.11
β3 : 2.15 (0.206) R2dE : 0.175 R2E : 0.131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.67 (0.779) R2dD*E : 0.0349 R2D*E : 0.045
γ1 : 0.589 (0.163) R2dN8 : 0.031 R2N8 : -0.0206
σ : 1.31
deviance : 795.54
__
_____
C
peak time of C : 3.15
E
wheather : radiation
threshold : 18.41
memory length : 1439
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.8
open length of G : 1.92

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
793.84 1.32 3.5 -0.674 1.68 2.11 -0.733 -3.74 0.593 3.21 18.43 1435 10.8 1.97
833.81 1.34 3.5 -0.84 1.69 2.23 -0.587 -- 0.591 3.15 18.43 1434 10.8 2.52
795.54 1.31 3.5 -0.618 1.72 2.15 -- -3.67 0.589 3.15 18.41 1439 10.8 1.92
834.88 1.35 3.51 -0.823 1.7 2.22 -- -- 0.59 3.15 18.43 1434 10.8 2.53
938.7 1.43 3.51 -0.605 -- 2.27 -- -3.54 0.552 -- 18.34 1328 10.8 1.89
1029.94 1.5 3.69 -1.21 1.62 -- -0.794 -- -0.138 3.19 -- -- -- --
1031.94 1.5 3.68 -1.19 1.62 -- -- -- -0.133 3.12 -- -- -- --
969.79 1.45 3.51 -0.768 -- 2.44 -- -- 0.554 -- 18.33 1304 10.8 2.53
853.59 1.36 3.51 -- 1.68 2.28 -- -- 0.596 3.13 18.43 1430 10.8 2.53
1180.84 1.61 3.68 -1.12 -- -- -- -- -0.0905 -- -- -- -- --
1069.35 1.53 3.65 -- 1.59 -- -- -- -6.12e-05 3.12 -- -- -- --
985.14 1.46 3.52 -- -- 2.49 -- -- 0.617 -- 18.3 1305 10.7 2.58
1214.08 1.63 3.65 -- -- -- -- -- 0.034 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 807.46 wind 9 43200 > th dose dependent rect. 11 2
3 809.81 radiation 20 1440 < th dose independent rect. 11 2
4 810.13 radiation 1 14400 < th dose dependent rect. 19 10
10 812.30 wind 9 43200 > th dose independent rect. 12 1
12 814.55 radiation 1 14400 < th dose dependent rect. 4 1
15 818.71 wind 9 43200 < th dose independent rect. 12 1
17 821.39 wind 9 43200 > th dose dependent rect. 15 2
18 821.96 wind 9 43200 > th dose independent rect. 16 1
20 822.18 radiation 20 1440 < th dose independent rect. 11 5
25 824.41 radiation 20 1440 < th dose dependent rect. 11 1
28 825.49 radiation 20 1440 < th dose independent rect. 8 8
29 826.04 radiation 20 1440 < th dose independent rect. 8 6
33 826.72 radiation 30 1440 < th dose dependent rect. 8 7
36 827.13 radiation 1 14400 < th dose independent rect. 18 11
37 827.20 temperature 20 43200 > th dose independent rect. 7 1
38 827.51 temperature 20 43200 < th dose independent rect. 7 1
39 827.64 radiation 10 1440 < th dose independent rect. 13 2
42 827.75 radiation 20 1440 < th dose independent rect. 2 14
44 827.86 radiation 20 1440 < th dose independent rect. 4 12
45 827.86 radiation 20 1440 < th dose independent rect. 23 17
47 827.88 radiation 20 1440 < th dose independent rect. 21 19
61 828.41 radiation 20 1440 < th dose independent rect. 11 22
63 828.48 radiation 1 1440 > th dose dependent rect. 11 2
64 828.72 radiation 40 1440 < th dose dependent rect. 11 2
74 829.42 radiation 30 1440 < th dose dependent rect. 2 13
83 829.56 radiation 30 1440 < th dose dependent rect. 23 16
87 829.60 radiation 30 1440 < th dose dependent rect. 21 18
117 830.38 wind 1 43200 < th dose dependent rect. 2 4
121 830.60 radiation 20 1440 < th dose independent sin 1 NA
157 831.52 wind 1 43200 < th dose independent rect. 2 2
173 831.86 radiation 10 1440 < th dose independent rect. 9 15
176 831.90 radiation 10 1440 < th dose independent rect. 9 18
178 831.94 radiation 10 1440 < th dose independent rect. 9 13
179 831.95 radiation 10 1440 < th dose independent sin 20 NA
196 832.28 radiation 20 1440 < th dose independent rect. 8 22
205 832.35 radiation 20 1440 < th dose dependent sin 1 NA
303 834.42 radiation 20 1440 < th dose independent rect. 2 22
329 834.52 radiation 20 1440 < th dose independent rect. 4 20
349 834.60 radiation 20 1440 < th dose independent no NA NA
351 834.60 radiation 20 1440 < th dose independent rect. 4 23
360 834.63 wind 1 43200 < th dose dependent rect. 4 2
370 834.67 radiation 20 1440 < th dose independent rect. 15 23
386 834.73 wind 1 43200 < th dose independent rect. 22 8
401 834.86 wind 1 43200 > th dose independent rect. 2 3
434 835.45 radiation 1 1440 > th dose dependent rect. 7 8
446 835.72 radiation 1 43200 < th dose independent rect. 24 5
482 836.27 radiation 1 43200 < th dose independent rect. 3 2
487 836.28 radiation 30 1440 < th dose dependent rect. 7 17
495 836.35 radiation 30 1440 < th dose dependent rect. 7 15
498 836.37 radiation 30 1440 < th dose dependent rect. 7 20
550 836.81 wind 1 43200 < th dose dependent rect. 16 2
557 836.88 radiation 30 1440 < th dose dependent rect. 11 23
636 837.60 radiation 30 1440 < th dose dependent rect. 2 22
682 837.80 radiation 30 1440 < th dose dependent no NA NA
698 837.90 radiation 1 1440 > th dose dependent rect. 11 22
705 837.96 radiation 1 14400 < th dose independent rect. 18 8
715 838.06 radiation 1 14400 < th dose independent rect. 18 5
762 838.34 wind 1 43200 < th dose independent rect. 20 10
826 838.61 radiation 30 1440 < th dose dependent rect. 14 23
842 838.75 wind 1 43200 < th dose independent rect. 18 12
856 838.93 wind 9 43200 < th dose independent rect. 16 1
865 839.10 radiation 1 43200 > th dose independent rect. 4 1
875 839.10 radiation 1 43200 > th dose dependent rect. 4 1
966 839.96 radiation 1 1440 > th dose dependent sin 2 NA
973 840.06 radiation 20 1440 > th dose independent rect. 8 5