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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0439600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.28 (0.0463) R2 : 0.096
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.678 (0.0974) R2dN8 : 0.124 R2N8 : 0.096
σ : 0.871
deviance : 348.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
319.93 0.84 5.17 6.98 0.11 -60.7 -0.964 361 -0.607 16.4 996.1 1307 -- --
334.49 0.858 6.26 0.538 0.0614 -1.13 -1.14 -- -0.623 16.8 996.1 1307 -- --
322.35 0.836 5.18 6.89 0.102 -60.9 -- 363 -0.611 15.6 996.2 1312 -- --
337.16 0.861 6.26 0.538 0.0944 -1.22 -- -- -0.63 13 996.2 1312 -- --
322.93 0.837 5.18 6.87 -- -61 -- 363 -0.613 -- 996.3 1312 -- --
337.8 0.862 6.26 0.514 0.0342 -- -1.23 -- -0.615 17 -- -- -- --
341.2 0.865 6.26 0.513 0.0895 -- -- -- -0.62 11.9 -- -- -- --
334.14 0.851 6.28 0.235 -- 0.505 -- -- -0.664 -- 996.9 15856 -- --
337.98 0.856 6.26 -- 0.0641 0.916 -- -- -0.618 14.1 999.5 2612 -- --
341.71 0.864 6.26 0.51 -- -- -- -- -0.621 -- -- -- -- --
348.13 0.873 6.27 -- 0.0835 -- -- -- -0.677 11.5 -- -- -- --
337.92 0.856 6.28 -- -- 0.545 -- -- -0.608 -- 997.2 15737 -- --
348.56 0.871 6.28 -- -- -- -- -- -0.678 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 311.19 temperature 25 720 > th dose dependent rect. 1 2
6 313.32 temperature 25 720 > th dose independent rect. 2 1
13 314.46 atmosphere 1000 270 < th dose dependent rect. 6 1
18 314.71 atmosphere 1000 10 < th dose dependent rect. 7 3
32 315.60 atmosphere 1005 10 < th dose dependent rect. 20 1
45 316.76 atmosphere 995 1440 > th dose independent rect. 4 23
46 316.89 temperature 15 30 > th dose dependent rect. 8 23
52 317.08 atmosphere 995 1440 > th dose independent rect. 17 10
62 317.73 temperature 20 90 > th dose dependent rect. 1 5
63 317.78 wind 1 4320 > th dose independent rect. 7 1
64 317.86 atmosphere 995 1440 > th dose independent rect. 8 19
66 317.88 wind 1 270 < th dose independent rect. 16 1
67 317.88 wind 1 270 < th dose dependent rect. 16 1
70 317.92 wind 1 4320 < th dose independent rect. 7 1
72 317.95 atmosphere 995 1440 > th dose independent rect. 6 21
79 318.38 atmosphere 995 1440 > th dose independent rect. 10 17
91 318.79 atmosphere 995 1440 > th dose independent rect. 17 23
95 318.99 wind 3 4320 < th dose dependent rect. 7 1
106 319.36 temperature 20 90 > th dose dependent rect. 11 19
109 319.39 temperature 20 10 > th dose dependent rect. 11 20
112 319.48 atmosphere 1005 270 < th dose independent rect. 3 4
122 319.60 atmosphere 1005 270 < th dose independent rect. 5 1
146 320.10 wind 3 1440 < th dose independent rect. 24 3
148 320.10 temperature 30 720 > th dose dependent rect. 18 15
156 320.23 wind 3 90 < th dose dependent rect. 18 1
179 320.67 wind 3 1440 > th dose independent rect. 24 1
183 320.70 wind 3 1440 > th dose independent rect. 24 3
184 320.70 atmosphere 995 1440 > th dose independent rect. 15 23
194 320.95 temperature 25 270 > th dose independent rect. 5 2
201 321.01 wind 5 1440 < th dose dependent rect. 24 3
203 321.02 wind 1 1440 > th dose dependent rect. 1 2
208 321.08 atmosphere 1005 14400 < th dose independent rect. 23 1
215 321.13 wind 3 1440 < th dose independent rect. 24 1
222 321.18 atmosphere 995 1440 > th dose independent rect. 10 23
223 321.19 atmosphere 995 1440 > th dose independent rect. 15 12
240 321.34 atmosphere 995 1440 > th dose independent sin 19 NA
255 321.41 atmosphere 995 1440 > th dose independent no NA NA
256 321.41 atmosphere 995 1440 < th dose independent sin 14 NA
264 321.41 atmosphere 995 1440 < th dose independent no NA NA
265 321.41 atmosphere 995 1440 < th dose independent rect. 15 4
480 321.42 atmosphere 995 1440 < th dose dependent sin 15 NA
490 321.42 atmosphere 995 1440 < th dose dependent no NA NA
492 321.42 atmosphere 995 1440 < th dose dependent rect. 15 4
705 321.43 atmosphere 995 1440 < th dose independent rect. 17 22
706 321.43 atmosphere 995 1440 < th dose dependent sin 13 NA
731 321.43 atmosphere 995 1440 < th dose dependent rect. 18 23
758 321.44 atmosphere 995 1440 < th dose dependent rect. 15 2
762 321.45 atmosphere 995 1440 > th dose independent sin 1 NA
803 321.47 atmosphere 995 1440 < th dose dependent sin 8 NA
805 321.49 atmosphere 995 1440 > th dose independent sin 8 NA
835 321.51 atmosphere 995 1440 < th dose independent sin 8 NA
873 321.58 atmosphere 995 1440 < th dose dependent rect. 17 2
981 321.86 atmosphere 1005 14400 > th dose independent rect. 23 1
982 321.86 atmosphere 995 1440 > th dose independent rect. 23 23
986 321.90 atmosphere 995 1440 > th dose independent rect. 8 14