Os04g0438400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectin methylesterase-like protein.
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Os04g0438400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectin methylesterase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.17 | 0.428 | 8.94 | 0.123 | 1.77 | -2.05 | 0.153 | -5.67 | -0.126 | 19.8 | 1.081 | 4334 | -- | -- |
| 99.67 | 0.465 | 9.05 | -0.44 | 1.38 | -1.25 | 0.233 | -- | -0.309 | 19.3 | 5.448 | 9771 | -- | -- |
| 83.24 | 0.425 | 8.94 | 0.118 | 1.77 | -2.05 | -- | -5.64 | -0.126 | 19.8 | 1.08 | 4330 | -- | -- |
| 94.91 | 0.454 | 9.1 | -0.626 | 1.75 | -1.13 | -- | -- | -0.361 | 20 | 5.291 | 11712 | -- | -- |
| 112.88 | 0.495 | 9.02 | -0.513 | -- | -3.21 | -- | -3.99 | -0.396 | -- | 2.655 | 5226 | -- | -- |
| 133.99 | 0.543 | 9.02 | -0.591 | 1.74 | -- | 0.0673 | -- | -0.0684 | 19.8 | -- | -- | -- | -- |
| 134 | 0.542 | 9.02 | -0.592 | 1.74 | -- | -- | -- | -0.0684 | 19.8 | -- | -- | -- | -- |
| 130.48 | 0.532 | 9.03 | -1.05 | -- | -2.97 | -- | -- | -0.519 | -- | 3.759 | 5240 | -- | -- |
| 107.51 | 0.483 | 9.08 | -- | 1.75 | -1.09 | -- | -- | -0.339 | 20 | 7.426 | 11727 | -- | -- |
| 298.4 | 0.807 | 8.97 | -0.613 | -- | -- | -- | -- | -0.0923 | -- | -- | -- | -- | -- |
| 143.25 | 0.56 | 9 | -- | 1.75 | -- | -- | -- | -0.00238 | 19.8 | -- | -- | -- | -- |
| 151.11 | 0.573 | 9.04 | -- | -- | -2.76 | -- | -- | -0.38 | -- | 5.307 | 5213 | -- | -- |
| 308.3 | 0.82 | 8.96 | -- | -- | -- | -- | -- | -0.0243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.84 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 3 | 78.35 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 12 |
| 4 | 78.65 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 11 | 78.88 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 14 | 79.18 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 16 | 79.23 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 14 |
| 19 | 79.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 42 | 79.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 46 | 79.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 51 | 79.77 | radiation | 1 | 14400 | > th | dose independent | sin | 16 | NA |
| 74 | 79.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 77 | 79.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 78 | 79.86 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 20 |
| 80 | 79.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 85 | 79.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 108 | 79.94 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 120 | 79.95 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 156 | 80.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 163 | 80.02 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 171 | 80.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 173 | 80.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 189 | 80.05 | radiation | 1 | 4320 | < th | dose dependent | sin | 14 | NA |
| 203 | 80.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 211 | 80.12 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 248 | 80.24 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 249 | 80.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 303 | 80.25 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 324 | 80.28 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 350 | 80.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 19 |
| 379 | 80.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 21 |
| 382 | 80.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 388 | 80.36 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 405 | 80.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 406 | 80.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 17 |
| 407 | 80.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 20 |
| 432 | 80.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 444 | 80.45 | radiation | 1 | 14400 | < th | dose independent | sin | 14 | NA |
| 461 | 80.47 | temperature | 30 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 492 | 80.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 19 |
| 498 | 80.52 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 515 | 80.56 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 520 | 80.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 18 |
| 526 | 80.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 21 |
| 612 | 80.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 17 |
| 617 | 80.60 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 649 | 80.63 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 11 |
| 666 | 80.66 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 15 |
| 675 | 80.68 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 694 | 80.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 21 |
| 716 | 80.73 | radiation | 1 | 14400 | < th | dose independent | sin | 22 | NA |
| 787 | 80.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 15 |
| 790 | 80.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 792 | 80.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 9 |
| 794 | 80.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 17 |
| 798 | 80.80 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 805 | 80.81 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 14 |
| 829 | 80.83 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 831 | 80.83 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 851 | 80.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 862 | 80.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 888 | 80.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 893 | 80.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 17 |
| 946 | 80.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 14 |