Os04g0436000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0436000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 361.75 | 0.894 | 6.12 | -1.44 | 2.48 | -2.79 | 0.791 | -5.25 | -0.141 | 19.9 | 1.091 | 1440 | 18.1 | 11.1 |
| 367.63 | 0.893 | 6.12 | -2.34 | 2.52 | -2.37 | 1.32 | -- | -0.436 | 20 | 1.174 | 1441 | 17.7 | 11.6 |
| 362.87 | 0.887 | 6.12 | -1.48 | 2.49 | -2.63 | -- | -4.89 | -0.141 | 19.9 | 1.07 | 1439 | 18.1 | 11.1 |
| 368.15 | 0.894 | 6.12 | -2.41 | 2.5 | -2.42 | -- | -- | -0.448 | 20 | 1.141 | 1441 | 17.7 | 11.6 |
| 675.1 | 1.21 | 6.07 | -1.25 | -- | -2.41 | -- | -4.66 | -1.02 | -- | 10.01 | 2439 | 18.3 | 11.3 |
| 521.73 | 1.07 | 6.11 | -2.8 | 2.41 | -- | 0.887 | -- | -0.357 | 20 | -- | -- | -- | -- |
| 523.99 | 1.07 | 6.11 | -2.82 | 2.42 | -- | -- | -- | -0.356 | 20 | -- | -- | -- | -- |
| 429.71 | 0.965 | 6.1 | -2.19 | -- | -4.71 | -- | -- | -0.494 | -- | 0.4316 | 2419 | 17.1 | 13.2 |
| 519.75 | 1.06 | 6.13 | -- | 2.5 | -2.46 | -- | -- | -0.261 | 20 | 1.337 | 1440 | 17.8 | 11.6 |
| 842.58 | 1.36 | 6.05 | -2.85 | -- | -- | -- | -- | -0.387 | -- | -- | -- | -- | -- |
| 734.26 | 1.27 | 6.04 | -- | 2.44 | -- | -- | -- | -0.041 | 19.9 | -- | -- | -- | -- |
| 526.07 | 1.07 | 6.05 | -- | -- | -4.31 | -- | -- | -0.502 | -- | 5.049 | 6776 | 16.8 | 12.9 |
| 1056.71 | 1.52 | 5.98 | -- | -- | -- | -- | -- | -0.0708 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 359.81 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 2 | 359.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 9 |
| 5 | 360.38 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 9 | 360.94 | wind | 5 | 43200 | > th | dose dependent | sin | 23 | NA |
| 16 | 361.40 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 26 | 361.44 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 28 | 361.73 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 31 | 361.80 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 13 |
| 35 | 362.00 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 39 | 362.10 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 40 | 362.10 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 41 | 362.10 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 43 | 362.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 59 | 362.43 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 61 | 362.45 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 77 | 362.58 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 114 | 363.22 | wind | 7 | 43200 | < th | dose independent | sin | 2 | NA |
| 124 | 363.39 | wind | 7 | 43200 | > th | dose independent | sin | 2 | NA |
| 137 | 363.66 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 140 | 363.69 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 169 | 364.08 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 215 | 364.60 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 216 | 364.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 21 |
| 218 | 364.63 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 283 | 365.13 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 291 | 365.19 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 303 | 365.31 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 309 | 365.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 339 | 365.53 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 340 | 365.53 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 344 | 365.55 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 366 | 365.72 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 419 | 366.10 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 499 | 366.56 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 507 | 366.64 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 515 | 366.69 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 558 | 366.93 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 568 | 366.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 577 | 367.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 583 | 367.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 672 | 367.55 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 726 | 367.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 758 | 368.00 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 789 | 368.15 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 799 | 368.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 830 | 368.35 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 949 | 369.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 23 |