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Os04g0435300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.95 (0.015) R2 : 0.647
β1 : -1.23 (0.0613) R2dD : 0.412 R2D : 0.122
β2 : 0.601 (0.0361) R2dC : 0.216 R2C : 0.228
β3 : -1.53 (0.0913) R2dE : 0.294 R2E : 0.0251
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0161 (0.0336) R2dN8 : 0.000374 R2N8 : -0.00772
σ : 0.277
deviance : 35.32
__
_____
C
peak time of C : 21.8
E
wheather : temperature
threshold : 18
memory length : 1942
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.53 0.28 8.98 -1.35 0.63 -0.886 -0.226 1.28 -0.0608 21.8 19.42 1642 -- --
35.58 0.278 8.94 -1.16 0.631 -1.42 -0.0801 -- 0.0304 21.7 18.1 1926 -- --
35.72 0.278 8.98 -1.34 0.633 -0.888 -- 1.28 -0.0603 21.8 19.43 1645 -- --
35.32 0.277 8.95 -1.23 0.601 -1.53 -- -- -0.0161 21.8 18 1942 -- --
56.24 0.349 8.96 -1.22 -- -0.701 -- 1.41 -0.017 -- 19.6 676 -- --
57.17 0.354 8.91 -0.752 0.622 -- -0.0934 -- 0.169 21.8 -- -- -- --
57.2 0.354 8.91 -0.748 0.622 -- -- -- 0.169 21.8 -- -- -- --
54.9 0.345 8.94 -1.31 -- -1.39 -- -- -0.0573 -- 18.32 2203 -- --
64.35 0.374 8.9 -- 0.612 -0.991 -- -- 0.193 21.7 17.58 1882 -- --
80.32 0.419 8.89 -0.742 -- -- -- -- 0.169 -- -- -- -- --
71.97 0.397 8.89 -- 0.62 -- -- -- 0.253 21.7 -- -- -- --
86.05 0.432 8.89 -- -- -0.981 -- -- 0.183 -- 17.51 2053 -- --
94.84 0.455 8.87 -- -- -- -- -- 0.251 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.23 wind 9 43200 > th dose independent rect. 9 5
2 36.24 temperature 20 1440 < th dose independent rect. 3 12
4 36.28 wind 9 43200 > th dose independent rect. 3 13
5 36.28 wind 9 43200 > th dose dependent rect. 10 6
12 36.33 temperature 20 1440 > th dose independent rect. 3 12
18 36.36 wind 9 43200 > th dose independent rect. 7 9
21 36.38 wind 9 43200 > th dose independent rect. 22 19
25 36.40 wind 9 43200 < th dose independent rect. 3 13
49 36.51 wind 9 43200 < th dose independent rect. 22 19
53 36.53 wind 9 43200 > th dose independent sin 1 NA
71 36.60 wind 9 43200 < th dose independent rect. 9 5
86 36.66 temperature 20 1440 < th dose independent sin 3 NA
91 36.69 wind 9 43200 < th dose independent sin 1 NA
103 36.70 wind 9 43200 > th dose dependent rect. 10 10
127 36.75 temperature 20 1440 > th dose independent sin 3 NA
131 36.76 wind 9 43200 < th dose independent rect. 8 7
147 36.79 wind 9 43200 > th dose independent rect. 19 22
182 36.87 temperature 20 1440 < th dose independent rect. 22 20
186 36.88 temperature 20 1440 < th dose independent rect. 22 18
212 36.94 humidity 60 43200 < th dose dependent rect. 8 1
217 36.96 wind 9 43200 < th dose independent rect. 19 22
248 37.04 temperature 20 1440 > th dose independent rect. 22 20
261 37.07 wind 9 43200 > th dose independent rect. 3 21
278 37.10 radiation 30 4320 < th dose independent rect. 16 16
282 37.11 wind 9 43200 > th dose independent no NA NA
295 37.12 wind 9 43200 > th dose independent rect. 7 23
318 37.15 wind 9 43200 > th dose independent rect. 13 23
319 37.15 wind 9 43200 > th dose dependent rect. 10 20
337 37.19 wind 9 43200 > th dose independent rect. 10 23
344 37.20 temperature 20 4320 < th dose dependent rect. 22 16
353 37.22 wind 9 43200 < th dose independent rect. 3 21
371 37.24 wind 9 43200 > th dose independent rect. 15 23
373 37.24 temperature 20 4320 < th dose dependent rect. 22 6
374 37.24 wind 9 43200 > th dose dependent rect. 10 13
386 37.25 wind 9 43200 > th dose dependent rect. 10 15
404 37.27 temperature 20 1440 < th dose independent rect. 9 22
408 37.27 wind 9 43200 < th dose independent rect. 13 23
410 37.28 wind 9 43200 < th dose independent no NA NA
421 37.28 wind 7 43200 > th dose dependent rect. 3 14
439 37.30 temperature 20 1440 < th dose independent rect. 18 22
447 37.30 wind 7 43200 > th dose dependent rect. 23 18
454 37.31 wind 9 43200 < th dose independent rect. 6 23
466 37.32 temperature 20 4320 < th dose dependent sin 7 NA
469 37.32 temperature 20 4320 < th dose dependent rect. 22 9
473 37.33 humidity 60 43200 < th dose independent rect. 8 1
494 37.34 wind 9 43200 < th dose independent rect. 15 23
496 37.34 humidity 50 43200 < th dose dependent rect. 13 1
497 37.34 temperature 20 1440 < th dose dependent rect. 3 2
498 37.34 temperature 20 4320 < th dose dependent rect. 23 2
557 37.39 temperature 20 1440 > th dose independent rect. 9 22
593 37.41 temperature 20 1440 < th dose independent rect. 1 23
598 37.42 temperature 20 1440 < th dose independent no NA NA
617 37.43 wind 9 43200 < th dose independent rect. 10 23
646 37.45 wind 7 43200 > th dose dependent rect. 7 9
658 37.46 wind 7 43200 > th dose dependent sin 2 NA
667 37.46 temperature 20 4320 < th dose dependent rect. 12 19
674 37.47 temperature 20 1440 < th dose independent rect. 15 23
681 37.48 temperature 20 4320 > th dose independent rect. 18 4
715 37.50 temperature 20 4320 < th dose independent rect. 19 3
722 37.50 temperature 20 1440 > th dose independent rect. 1 23
735 37.51 temperature 20 1440 > th dose independent no NA NA
798 37.55 wind 9 43200 > th dose dependent rect. 13 19
805 37.56 temperature 20 720 < th dose independent rect. 9 18
851 37.59 radiation 30 4320 < th dose independent rect. 7 1
903 37.62 radiation 30 4320 < th dose independent rect. 2 6
906 37.62 temperature 20 4320 < th dose dependent no NA NA
919 37.63 wind 9 43200 > th dose dependent sin 19 NA
946 37.65 temperature 20 14400 < th dose independent rect. 21 1
947 37.65 radiation 30 4320 < th dose independent rect. 4 4
973 37.66 temperature 20 4320 < th dose dependent rect. 5 23
998 37.69 radiation 30 4320 < th dose independent rect. 18 14