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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0435200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0384) R2 : 0.117
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.65 (0.358) R2dE : 0.112 R2E : 0.114
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0919 (0.0811) R2dN8 : 0.00329 R2N8 : 0.00484
σ : 0.724
deviance : 240.21
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.95
memory length : 29
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.8
open length of G : 0.683

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
235.26 0.721 3 0.271 0.159 1.61 -0.631 7.33 -0.075 4.59 22 38 19.4 1.02
238.17 0.719 3.01 0.194 0.11 2.43 -0.77 -- -0.0651 5.5 23.46 27 19.5 1
235.77 0.715 3 0.277 0.165 1.59 -- 7.93 -0.0758 2.86 22 35 19.5 0.962
239.36 0.721 3.01 0.168 0.157 2.45 -- -- -0.0667 2.73 23.68 26 19.6 0.876
237.26 0.717 3 0.285 -- 1.58 -- 7.95 -0.0703 -- 22 35 19.5 0.922
265.69 0.764 3.02 0.241 0.133 -- 1.01 -- -0.111 19.6 -- -- -- --
267.05 0.765 3.03 0.21 0.198 -- -- -- -0.113 23.1 -- -- -- --
239.29 0.724 3.01 0.186 -- 2.64 -- -- -0.0715 -- 23.97 25 19.8 0.45
238.73 0.724 3.02 -- 0.158 2.66 -- -- -0.0949 2.36 23.95 29 19.8 0.683
269.5 0.767 3.02 0.214 -- -- -- -- -0.111 -- -- -- -- --
268.21 0.766 3.03 -- 0.2 -- -- -- -0.136 23.2 -- -- -- --
240.21 0.724 3.02 -- -- 2.65 -- -- -0.0919 -- 23.95 29 19.8 0.683
270.71 0.768 3.03 -- -- -- -- -- -0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 240.95 temperature 20.0 90 > th dose dependent rect. 19 1
2 242.62 humidity 90.0 90 > th dose independent rect. 14 1
5 242.62 humidity 90.0 90 > th dose dependent rect. 14 1
8 242.67 radiation 1.0 10 < th dose independent rect. 11 5
12 242.68 radiation 1.0 10 < th dose independent rect. 13 3
20 242.72 radiation 1.0 10 < th dose independent rect. 15 1
43 243.46 temperature 25.0 90 > th dose independent rect. 19 1
52 244.41 radiation 1.0 10 < th dose independent rect. 6 11
64 245.10 radiation 1.0 10 < th dose dependent rect. 15 1
80 245.52 temperature 25.0 90 > th dose independent rect. 2 1
85 245.71 radiation 10.0 90 < th dose dependent rect. 14 1
90 245.96 radiation 1.0 10 < th dose dependent rect. 6 11
92 246.25 temperature 20.0 30 > th dose dependent rect. 19 11
93 246.33 temperature 20.0 30 > th dose dependent rect. 19 9
94 246.43 temperature 25.0 90 > th dose independent rect. 1 3
95 246.48 temperature 20.0 90 > th dose dependent rect. 18 13
100 246.74 temperature 25.0 90 > th dose dependent rect. 2 1
102 246.84 temperature 25.0 270 > th dose independent rect. 23 5
114 247.31 temperature 25.0 90 > th dose independent rect. 18 10
116 247.38 humidity 70.0 90 < th dose independent rect. 19 1
134 247.86 temperature 25.0 90 > th dose dependent rect. 1 3
144 248.01 temperature 25.0 270 < th dose independent rect. 16 11
148 248.20 temperature 25.0 270 > th dose independent rect. 16 12
154 248.29 temperature 20.0 270 > th dose dependent rect. 16 14
157 248.32 precipitation 0.1 10 < th dose independent rect. 3 23
158 248.32 precipitation 0.1 10 < th dose dependent rect. 3 23
168 248.46 temperature 25.0 90 < th dose dependent rect. 14 1
169 248.46 humidity 70.0 90 < th dose dependent rect. 19 1
183 248.54 temperature 20.0 270 > th dose dependent rect. 16 12
184 248.61 temperature 25.0 270 > th dose dependent rect. 23 5
202 248.82 precipitation 0.1 10 < th dose independent rect. 20 23
204 248.82 precipitation 0.1 10 < th dose dependent rect. 20 23
205 248.85 radiation 1.0 10 < th dose independent rect. 7 13
213 248.96 radiation 10.0 90 < th dose dependent rect. 14 6
232 249.44 radiation 1.0 10 < th dose independent rect. 2 18
235 249.55 radiation 10.0 90 < th dose dependent rect. 1 19
240 249.72 atmosphere 1000.0 90 > th dose independent rect. 20 17
253 249.89 wind 5.0 10 < th dose independent rect. 19 1
256 249.91 radiation 1.0 10 < th dose independent rect. 15 5
269 249.94 radiation 1.0 10 < th dose independent sin 23 NA
295 250.06 temperature 20.0 270 > th dose dependent sin 12 NA
320 250.25 temperature 25.0 270 < th dose independent rect. 16 18
329 250.30 temperature 30.0 270 < th dose dependent rect. 16 10
332 250.32 radiation 1.0 90 < th dose independent rect. 1 19
339 250.38 radiation 1.0 10 > th dose independent sin 23 NA
341 250.38 temperature 20.0 30 > th dose independent rect. 2 18
374 250.65 radiation 10.0 90 < th dose dependent rect. 7 13
421 251.00 temperature 20.0 10 > th dose dependent rect. 2 2
432 251.07 temperature 25.0 270 < th dose independent sin 12 NA
444 251.14 radiation 10.0 90 < th dose independent rect. 14 6
459 251.20 temperature 30.0 270 < th dose dependent rect. 17 18
471 251.26 temperature 25.0 30 > th dose dependent rect. 19 5
556 251.61 wind 7.0 270 < th dose independent rect. 22 22
560 251.62 temperature 25.0 270 > th dose independent rect. 16 4
578 251.67 precipitation 0.1 10 < th dose independent rect. 20 16
581 251.67 precipitation 0.1 10 < th dose dependent rect. 20 16
583 251.69 temperature 30.0 10 < th dose dependent rect. 20 6
586 251.71 temperature 25.0 270 > th dose independent sin 13 NA
597 251.73 atmosphere 1000.0 90 > th dose independent rect. 20 22
603 251.75 precipitation 0.1 10 < th dose independent rect. 20 19
604 251.75 precipitation 0.1 10 < th dose dependent rect. 20 19
615 251.79 humidity 90.0 90 < th dose independent rect. 7 11
631 251.86 temperature 25.0 720 > th dose independent rect. 18 1
641 251.92 wind 3.0 90 < th dose independent rect. 2 1
656 251.97 temperature 25.0 10 < th dose independent rect. 18 8
659 252.01 atmosphere 1000.0 10 > th dose independent rect. 3 23
663 252.04 temperature 30.0 270 < th dose dependent sin 13 NA
666 252.05 wind 5.0 30 < th dose independent rect. 14 6
704 252.13 precipitation 0.1 30 < th dose independent rect. 19 1
705 252.13 precipitation 0.1 30 < th dose dependent rect. 19 1
723 252.21 atmosphere 995.0 30 > th dose dependent rect. 19 1
730 252.24 temperature 20.0 10 > th dose independent rect. 2 2
738 252.28 precipitation 0.1 30 < th dose independent sin 3 NA
740 252.28 precipitation 0.1 30 < th dose dependent sin 3 NA
768 252.36 atmosphere 1015.0 90 < th dose dependent rect. 2 1
820 252.44 wind 7.0 90 < th dose independent rect. 1 19
842 252.53 humidity 90.0 90 < th dose independent rect. 5 13
863 252.59 wind 5.0 90 < th dose dependent rect. 2 1
873 252.61 temperature 30.0 10 < th dose dependent rect. 18 8
874 252.61 temperature 15.0 270 > th dose dependent rect. 23 9
895 252.65 temperature 25.0 10 < th dose independent rect. 14 2
906 252.67 humidity 80.0 90 > th dose independent rect. 2 1
910 252.68 humidity 60.0 14400 > th dose independent rect. 21 6
919 252.70 atmosphere 1000.0 30 > th dose independent rect. 19 1
943 252.76 atmosphere 1015.0 90 < th dose dependent rect. 1 8
947 252.77 temperature 30.0 270 < th dose dependent rect. 19 3
961 252.79 precipitation 0.1 30 > th dose independent rect. 1 17
971 252.80 atmosphere 1010.0 10 < th dose dependent rect. 2 1
977 252.81 atmosphere 995.0 30 > th dose dependent rect. 20 23
997 252.85 atmosphere 1000.0 270 < th dose dependent rect. 23 5