Os04g0435000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0435000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.95 | 0.649 | 5.99 | 2.31 | 1.49 | -2.34 | 0.678 | 5.7 | 0.393 | 21.9 | 24.53 | 1386 | -- | -- |
| 204.78 | 0.666 | 6.13 | 1.14 | 1.49 | -1.93 | 0.927 | -- | 0.26 | 21.3 | 20.97 | 6181 | -- | -- |
| 192.36 | 0.646 | 6.01 | 2.04 | 1.5 | -2.25 | -- | 4.55 | 0.4 | 21.9 | 23.48 | 1381 | -- | -- |
| 206.61 | 0.669 | 6.13 | 1.09 | 1.44 | -1.97 | -- | -- | 0.241 | 21.5 | 21.02 | 5951 | -- | -- |
| 318.81 | 0.832 | 5.96 | 2.09 | -- | -2.14 | -- | 4.45 | 0.47 | -- | 23 | 1468 | -- | -- |
| 328.11 | 0.849 | 6.24 | 0.0921 | 1.41 | -- | 0.677 | -- | -0.289 | 21.4 | -- | -- | -- | -- |
| 329.78 | 0.85 | 6.24 | 0.0677 | 1.41 | -- | -- | -- | -0.289 | 21.4 | -- | -- | -- | -- |
| 326.81 | 0.842 | 6.09 | 1.06 | -- | -2 | -- | -- | 0.218 | -- | 20.48 | 5868 | -- | -- |
| 226.89 | 0.702 | 6.18 | -- | 1.45 | -1.6 | -- | -- | -0.0194 | 21.5 | 22.58 | 5942 | -- | -- |
| 445.92 | 0.987 | 6.2 | 0.0755 | -- | -- | -- | -- | -0.294 | -- | -- | -- | -- | -- |
| 329.9 | 0.85 | 6.24 | -- | 1.41 | -- | -- | -- | -0.297 | 21.4 | -- | -- | -- | -- |
| 347.18 | 0.868 | 6.14 | -- | -- | -1.58 | -- | -- | -0.0278 | -- | 22.54 | 5866 | -- | -- |
| 446.07 | 0.986 | 6.21 | -- | -- | -- | -- | -- | -0.303 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 19 |
| 16 | 191.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 32 | 191.82 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 65 | 192.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 80 | 192.46 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 88 | 192.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 98 | 192.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 105 | 192.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 135 | 192.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 199 | 193.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 245 | 194.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 256 | 195.21 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 321 | 197.09 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 335 | 197.73 | humidity | 90 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 361 | 198.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 373 | 199.22 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 380 | 199.25 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 385 | 199.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 386 | 199.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 404 | 199.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 439 | 199.89 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 451 | 199.99 | humidity | 90 | 43200 | < th | dose independent | sin | 15 | NA |
| 485 | 200.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 490 | 200.46 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 532 | 200.87 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 533 | 200.88 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 20 |
| 590 | 201.16 | humidity | 90 | 43200 | > th | dose independent | sin | 16 | NA |
| 598 | 201.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 15 |
| 720 | 202.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 12 |
| 759 | 202.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 766 | 202.37 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 774 | 202.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 783 | 202.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 21 |
| 792 | 202.53 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 7 |
| 800 | 202.57 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 802 | 202.58 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 852 | 202.86 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 867 | 202.91 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 870 | 202.94 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 906 | 203.11 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 946 | 203.27 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 954 | 203.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 19 |