Os04g0434900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0434900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.48 | 0.337 | 3.08 | -0.0742 | 0.0517 | 0.659 | -0.132 | 2.36 | 0.0164 | 15.6 | 1015 | 10 | -- | -- |
| 52.93 | 0.339 | 3.07 | -0.101 | 0.0583 | 1.12 | -0.273 | -- | 0.045 | 17.2 | 1016 | 11 | -- | -- |
| 51.51 | 0.337 | 3.08 | -0.0754 | 0.0528 | 0.777 | -- | 2.7 | 0.0155 | 14.2 | 1015 | 10 | -- | -- |
| 52.79 | 0.338 | 3.08 | -0.0868 | 0.0639 | 1.32 | -- | -- | 0.0357 | 15.1 | 1016 | 11 | -- | -- |
| 51.67 | 0.337 | 3.08 | -0.0784 | -- | 0.686 | -- | 2.51 | 0.014 | -- | 1015 | 26 | -- | -- |
| 56.42 | 0.352 | 3.08 | -0.0433 | 0.0378 | -- | -0.266 | -- | 0.0142 | 15.4 | -- | -- | -- | -- |
| 56.64 | 0.352 | 3.09 | -0.0482 | 0.0368 | -- | -- | -- | 0.0127 | 15.6 | -- | -- | -- | -- |
| 52.94 | 0.339 | 3.08 | -0.0698 | -- | 1.27 | -- | -- | 0.0221 | -- | 1016 | 11 | -- | -- |
| 52.86 | 0.339 | 3.08 | -- | 0.0612 | 1.29 | -- | -- | 0.0362 | 14.4 | 1016 | 11 | -- | -- |
| 56.72 | 0.352 | 3.09 | -0.0497 | -- | -- | -- | -- | 0.0117 | -- | -- | -- | -- | -- |
| 56.7 | 0.352 | 3.08 | -- | 0.0377 | -- | -- | -- | 0.018 | 15.6 | -- | -- | -- | -- |
| 53.07 | 0.339 | 3.08 | -- | -- | 1.26 | -- | -- | 0.0273 | -- | 1016 | 11 | -- | -- |
| 56.78 | 0.352 | 3.08 | -- | -- | -- | -- | -- | 0.0172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.26 | atmosphere | 1015 | 30 | < th | dose independent | rect. | 23 | 23 |
| 3 | 51.00 | humidity | 50 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 51.01 | humidity | 50 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 39 | 51.23 | atmosphere | 1015 | 30 | < th | dose independent | rect. | 13 | 23 |
| 42 | 51.39 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 16 | 9 |
| 43 | 51.41 | atmosphere | 1015 | 10 | < th | dose independent | sin | 8 | NA |
| 48 | 51.41 | atmosphere | 1015 | 10 | < th | dose independent | sin | 20 | NA |
| 54 | 51.41 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 23 | 23 |
| 68 | 51.43 | atmosphere | 1015 | 30 | < th | dose independent | rect. | 15 | 23 |
| 70 | 51.44 | atmosphere | 1015 | 720 | > th | dose independent | rect. | 21 | 2 |
| 89 | 51.44 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 15 | 23 |
| 109 | 51.45 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 9 | 16 |
| 114 | 51.46 | atmosphere | 1015 | 720 | > th | dose independent | sin | 22 | NA |
| 118 | 51.46 | atmosphere | 1015 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 225 | 51.48 | atmosphere | 1015 | 10 | > th | dose independent | sin | 7 | NA |
| 321 | 51.48 | atmosphere | 1015 | 10 | > th | dose independent | no | NA | NA |
| 329 | 51.48 | atmosphere | 1015 | 10 | < th | dose independent | no | NA | NA |
| 339 | 51.48 | atmosphere | 1015 | 10 | > th | dose independent | rect. | 23 | 1 |