Os04g0434700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0434700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.16 | 0.453 | 7.21 | -1.74 | 2.24 | -2.09 | 0.681 | -1.62 | 0.0531 | 23.7 | 25.3 | 6094 | -- | -- |
| 94.47 | 0.453 | 7.26 | -1.91 | 2.22 | -1.7 | 0.675 | -- | 0.0322 | 23.8 | 29.59 | 6239 | -- | -- |
| 95.17 | 0.454 | 7.21 | -1.77 | 2.23 | -2.09 | -- | -1.61 | 0.0496 | 23.7 | 25.3 | 6082 | -- | -- |
| 96.43 | 0.457 | 7.25 | -1.9 | 2.23 | -1.67 | -- | -- | 0.0667 | 23.8 | 39.81 | 6177 | -- | -- |
| 360.97 | 0.885 | 7.21 | -1.83 | -- | -2.28 | -- | -0.247 | 0.0328 | -- | 37.92 | 2373 | -- | -- |
| 141.37 | 0.557 | 7.16 | -1.05 | 2.27 | -- | 0.745 | -- | 0.456 | 23.8 | -- | -- | -- | -- |
| 143.78 | 0.562 | 7.16 | -1.08 | 2.27 | -- | -- | -- | 0.453 | 23.7 | -- | -- | -- | -- |
| 322.13 | 0.836 | 7.22 | -1.85 | -- | -3.02 | -- | -- | -0.00429 | -- | 53.18 | 913 | -- | -- |
| 157.53 | 0.585 | 7.17 | -- | 2.2 | -0.94 | -- | -- | 0.436 | 23.6 | 48.13 | 1346 | -- | -- |
| 467.86 | 1.01 | 7.11 | -1.02 | -- | -- | -- | -- | 0.481 | -- | -- | -- | -- | -- |
| 174.65 | 0.618 | 7.14 | -- | 2.26 | -- | -- | -- | 0.574 | 23.7 | -- | -- | -- | -- |
| 402.1 | 0.934 | 7.15 | -- | -- | -2.28 | -- | -- | 0.299 | -- | 54.81 | 898 | -- | -- |
| 495.12 | 1.04 | 7.09 | -- | -- | -- | -- | -- | 0.594 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 7 | 94.67 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 16 |
| 31 | 94.79 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 33 | 94.80 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 15 |
| 126 | 95.12 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 239 | 95.37 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 23 |
| 248 | 95.38 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 250 | 95.39 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 309 | 95.45 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 355 | 95.53 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 423 | 95.63 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 430 | 95.64 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 534 | 95.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 13 |
| 569 | 95.83 | temperature | 20 | 1440 | > th | dose dependent | sin | 2 | NA |
| 607 | 95.88 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 3 |
| 612 | 95.89 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 620 | 95.90 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 645 | 95.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 679 | 95.98 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 5 |
| 694 | 95.99 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 7 |
| 700 | 96.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 751 | 96.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 755 | 96.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 9 |
| 857 | 96.17 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 858 | 96.18 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 929 | 96.22 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 23 |