Os04g0433300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0433300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.22 | 0.526 | 7.72 | 0.516 | 1.11 | -1.8 | -0.392 | 0.97 | 0.124 | 8.45 | 15.1 | 347 | -- | -- |
| 126.13 | 0.523 | 7.72 | 0.445 | 1.12 | -1.84 | -0.5 | -- | 0.106 | 8.5 | 15.14 | 348 | -- | -- |
| 125.64 | 0.522 | 7.71 | 0.517 | 1.12 | -1.77 | -- | 1.13 | 0.124 | 8.36 | 15.1 | 354 | -- | -- |
| 126.63 | 0.524 | 7.74 | 0.354 | 1.12 | -1.78 | -- | -- | 0.0802 | 8.41 | 14.83 | 342 | -- | -- |
| 175.15 | 0.616 | 7.7 | 0.827 | -- | -2.5 | -- | 1.52 | 0.305 | -- | 16.32 | 510 | -- | -- |
| 161.39 | 0.596 | 7.79 | -0.0482 | 1.52 | -- | -0.0498 | -- | -0.183 | 7.47 | -- | -- | -- | -- |
| 161.4 | 0.595 | 7.79 | -0.0494 | 1.52 | -- | -- | -- | -0.183 | 7.47 | -- | -- | -- | -- |
| 177.23 | 0.62 | 7.74 | 0.555 | -- | -2.5 | -- | -- | 0.222 | -- | 15.87 | 506 | -- | -- |
| 129.4 | 0.53 | 7.75 | -- | 1.15 | -1.63 | -- | -- | 0.019 | 8.26 | 13.97 | 346 | -- | -- |
| 284.95 | 0.789 | 7.82 | -0.0258 | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
| 161.47 | 0.594 | 7.78 | -- | 1.52 | -- | -- | -- | -0.178 | 7.47 | -- | -- | -- | -- |
| 184.62 | 0.633 | 7.75 | -- | -- | -2.26 | -- | -- | 0.137 | -- | 16.36 | 495 | -- | -- |
| 284.97 | 0.788 | 7.82 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 19 |
| 2 | 117.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 31 | 120.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 44 | 121.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 46 | 121.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 53 | 121.29 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 65 | 121.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 69 | 121.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 86 | 121.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 116 | 122.51 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 145 | 122.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 154 | 122.94 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 155 | 122.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 167 | 123.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 174 | 123.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 185 | 123.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 205 | 123.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 403 | 125.02 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 420 | 125.14 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 471 | 125.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 482 | 125.67 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 16 |
| 524 | 125.89 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 547 | 126.03 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 18 |
| 618 | 126.33 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 643 | 126.47 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 652 | 126.52 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 699 | 126.75 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |
| 719 | 126.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 722 | 126.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 736 | 126.91 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 746 | 126.94 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 14 |
| 839 | 127.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 855 | 127.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 876 | 127.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 888 | 127.59 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 15 |
| 936 | 127.77 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 1 |