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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0433000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BTB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.015) R2 : 0.000255
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0107 (0.0315) R2dN8 : 0.00033 R2N8 : 0.000255
σ : 0.282
deviance : 36.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.66 0.277 3.02 0.181 0.179 -0.168 -1.22 1.23 0.0509 12 0.3001 114 -- --
35.6 0.278 3.03 0.135 0.151 -0.14 0.108 -- 0.0287 12.5 0.02007 126 -- --
35.65 0.28 3.03 0.103 0.0976 -0.0743 -- 0.204 0.0215 9.56 0.3001 114 -- --
35.61 0.278 3.02 0.121 0.16 -0.144 -- -- 0.0354 11.8 0.009019 126 -- --
35.73 0.278 3.03 0.124 -- -0.042 -- 0.219 0.0298 -- 0.04674 117 -- --
36.01 0.281 3.03 0.0937 0.0469 -- -0.108 -- 0.0196 4.15 -- -- -- --
36.03 0.281 3.03 0.095 0.0497 -- -- -- 0.0202 5.31 -- -- -- --
35.93 0.279 3.03 0.112 -- -0.0557 -- -- 0.0363 -- 10.08 274 -- --
35.93 0.279 3.02 -- 0.158 -0.147 -- -- 0.0372 11.7 0.0252 127 -- --
36.16 0.281 3.03 0.0967 -- -- -- -- 0.0215 -- -- -- -- --
36.27 0.282 3.04 -- 0.0513 -- -- -- 0.00966 5.24 -- -- -- --
36.14 0.28 3.03 -- -- -0.0726 -- -- 0.0174 -- 18.05 282 -- --
36.41 0.282 3.04 -- -- -- -- -- 0.0107 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.53 radiation 30.0 43200 < th dose dependent rect. 21 1
9 32.56 temperature 10.0 1440 > th dose independent rect. 21 1
12 32.56 temperature 30.0 1440 < th dose independent rect. 21 1
16 32.56 humidity 50.0 1440 > th dose independent rect. 21 1
22 32.56 atmosphere 995.0 1440 > th dose independent rect. 21 1
23 32.56 radiation 1.0 1440 < th dose independent rect. 21 1
43 32.56 temperature 10.0 1440 > th dose independent rect. 22 23
47 32.59 wind 3.0 30 > th dose independent rect. 20 1
48 32.59 temperature 25.0 30 > th dose independent rect. 20 1
50 32.60 atmosphere 1005.0 30 > th dose dependent rect. 20 1
51 32.61 humidity 80.0 30 > th dose independent rect. 20 1
53 32.62 wind 9.0 1440 < th dose independent rect. 21 1
54 32.63 temperature 20.0 30 > th dose dependent rect. 20 1
58 32.65 humidity 90.0 30 < th dose independent rect. 20 1
59 32.65 atmosphere 1005.0 30 > th dose independent rect. 20 1
63 32.66 wind 1.0 30 > th dose dependent rect. 20 1
67 32.68 wind 5.0 30 < th dose independent rect. 20 1
71 32.68 humidity 50.0 30 > th dose dependent rect. 20 1
76 32.69 temperature 10.0 30 > th dose independent rect. 20 1
78 32.69 temperature 30.0 30 < th dose independent rect. 20 1
79 32.69 humidity 50.0 30 > th dose independent rect. 20 1
83 32.69 atmosphere 1010.0 30 < th dose independent rect. 20 1
85 32.69 radiation 1.0 30 < th dose independent rect. 20 1
90 32.69 precipitation 0.1 30 < th dose independent rect. 20 1
91 32.69 temperature 10.0 30 > th dose independent rect. 21 23
92 32.69 radiation 1.0 30 < th dose dependent rect. 20 1
97 32.69 precipitation 0.1 30 < th dose dependent rect. 20 1
98 32.71 wind 9.0 30 < th dose dependent rect. 20 1
103 32.78 wind 9.0 30 < th dose independent rect. 21 23
104 32.81 atmosphere 1015.0 30 < th dose dependent rect. 20 1
107 32.83 humidity 90.0 30 < th dose dependent rect. 20 1
108 32.87 temperature 30.0 30 < th dose dependent rect. 20 1
119 32.98 temperature 25.0 30 > th dose independent rect. 20 3
158 33.22 atmosphere 1005.0 10 > th dose dependent rect. 20 3
163 33.28 temperature 25.0 30 > th dose dependent rect. 20 3
173 33.59 atmosphere 995.0 30 > th dose independent rect. 21 23
184 33.79 humidity 90.0 10 < th dose independent rect. 20 3
194 33.97 atmosphere 1005.0 30 > th dose independent rect. 20 3
203 34.08 precipitation 0.1 30 < th dose independent rect. 21 23
204 34.08 precipitation 0.1 30 < th dose dependent rect. 21 23
220 34.23 humidity 80.0 30 > th dose independent rect. 20 3
224 34.24 temperature 25.0 90 > th dose independent rect. 19 10
231 34.28 temperature 25.0 10 > th dose dependent rect. 20 9
241 34.33 temperature 10.0 30 > th dose dependent rect. 23 8
242 34.34 precipitation 0.1 1440 < th dose independent rect. 21 1
243 34.34 precipitation 0.1 1440 < th dose dependent rect. 21 1
250 34.37 wind 5.0 30 < th dose independent rect. 20 3
255 34.38 radiation 1.0 90 < th dose dependent rect. 1 22
259 34.42 atmosphere 1005.0 30 > th dose dependent rect. 2 3
270 34.44 humidity 50.0 30 > th dose independent rect. 21 23
274 34.45 wind 3.0 10 > th dose independent rect. 20 3
275 34.45 precipitation 0.1 30 < th dose independent rect. 7 16
276 34.45 atmosphere 995.0 30 > th dose independent rect. 23 21
278 34.45 precipitation 0.1 30 < th dose dependent rect. 7 16
282 34.47 temperature 10.0 1440 > th dose independent rect. 24 8
285 34.47 temperature 30.0 1440 < th dose independent rect. 24 8
289 34.47 humidity 50.0 1440 > th dose independent rect. 24 8
294 34.47 atmosphere 995.0 1440 > th dose independent rect. 24 8
295 34.47 temperature 10.0 1440 > th dose independent rect. 8 16
300 34.48 radiation 10.0 10 < th dose independent rect. 23 11
309 34.50 radiation 10.0 10 < th dose independent rect. 23 9
310 34.50 wind 1.0 30 > th dose independent rect. 7 16
314 34.51 temperature 10.0 30 > th dose independent rect. 23 8
315 34.51 temperature 30.0 30 < th dose independent rect. 23 8
316 34.51 humidity 50.0 30 > th dose independent rect. 23 8
319 34.51 atmosphere 995.0 30 > th dose independent rect. 23 8
323 34.51 temperature 10.0 30 > th dose independent rect. 7 16
325 34.51 atmosphere 1015.0 30 < th dose independent rect. 7 16
327 34.52 wind 9.0 30 < th dose independent rect. 23 8
336 34.54 wind 9.0 30 < th dose independent rect. 7 16
345 34.55 radiation 1.0 90 < th dose independent rect. 1 22
346 34.55 wind 1.0 14400 < th dose dependent rect. 6 1
348 34.55 temperature 10.0 30 > th dose dependent rect. 23 21
351 34.56 precipitation 0.1 30 < th dose independent rect. 23 8
354 34.56 humidity 80.0 14400 < th dose dependent rect. 7 2
355 34.56 temperature 25.0 720 > th dose dependent rect. 4 4
357 34.56 precipitation 0.1 30 < th dose dependent rect. 23 8
360 34.56 radiation 1.0 90 < th dose dependent rect. 19 22
370 34.57 radiation 40.0 10 < th dose dependent rect. 23 12
373 34.58 precipitation 0.1 720 < th dose independent rect. 15 8
380 34.58 precipitation 0.1 720 < th dose dependent rect. 15 8
383 34.59 humidity 90.0 30 < th dose independent rect. 7 16
385 34.59 radiation 10.0 43200 < th dose dependent rect. 23 1
400 34.60 atmosphere 995.0 10 > th dose independent rect. 10 10
409 34.61 precipitation 0.1 30 < th dose independent rect. 20 3
416 34.61 radiation 10.0 4320 < th dose dependent rect. 21 3
420 34.61 precipitation 0.1 30 < th dose dependent rect. 20 3
424 34.62 temperature 10.0 1440 > th dose independent rect. 21 3
427 34.62 temperature 30.0 1440 < th dose independent rect. 21 3
431 34.62 humidity 50.0 1440 > th dose independent rect. 21 3
437 34.62 atmosphere 995.0 1440 > th dose independent rect. 21 3
438 34.62 radiation 1.0 1440 < th dose independent rect. 21 3
463 34.62 atmosphere 995.0 720 > th dose independent rect. 23 16
464 34.62 temperature 10.0 1440 > th dose independent rect. 24 21
467 34.62 radiation 1.0 90 < th dose independent rect. 19 22
476 34.63 precipitation 0.1 1440 < th dose independent rect. 23 1
477 34.63 temperature 10.0 30 > th dose independent rect. 20 3
479 34.63 temperature 30.0 30 < th dose independent rect. 20 3
480 34.63 humidity 50.0 30 > th dose independent rect. 20 3
485 34.63 atmosphere 1010.0 30 < th dose independent rect. 20 3
487 34.63 radiation 1.0 30 < th dose independent rect. 20 3
496 34.63 wind 9.0 30 < th dose independent rect. 23 21
497 34.63 temperature 10.0 30 > th dose independent rect. 23 21
499 34.63 precipitation 0.1 1440 < th dose dependent rect. 23 1
500 34.63 radiation 1.0 30 < th dose dependent rect. 20 3
525 34.65 temperature 25.0 720 > th dose independent rect. 3 6
548 34.66 precipitation 0.1 1440 < th dose independent rect. 21 3
550 34.66 humidity 80.0 10 > th dose independent rect. 23 11
558 34.66 precipitation 0.1 1440 < th dose dependent rect. 21 3
559 34.67 humidity 70.0 14400 > th dose independent rect. 8 1
565 34.67 wind 9.0 30 < th dose dependent rect. 20 3
570 34.67 radiation 40.0 30 < th dose dependent rect. 23 8
597 34.68 radiation 1.0 90 < th dose dependent rect. 17 23
599 34.69 temperature 10.0 720 > th dose independent rect. 15 8
601 34.69 temperature 10.0 720 > th dose independent rect. 23 16
602 34.69 atmosphere 1000.0 30 > th dose independent rect. 23 23
608 34.70 temperature 25.0 720 > th dose independent rect. 5 3
610 34.70 humidity 80.0 4320 < th dose independent rect. 3 8
612 34.70 wind 7.0 10 < th dose independent rect. 20 14
613 34.70 precipitation 0.1 720 < th dose independent rect. 11 16
618 34.70 precipitation 0.1 720 < th dose dependent rect. 11 16
621 34.71 wind 1.0 10 > th dose independent rect. 10 10
624 34.71 precipitation 0.1 30 < th dose independent rect. 23 21
627 34.71 precipitation 0.1 30 < th dose dependent rect. 23 21
631 34.72 humidity 50.0 720 > th dose independent rect. 3 8
632 34.72 humidity 80.0 4320 > th dose independent rect. 3 8
634 34.72 precipitation 0.1 10 < th dose independent rect. 10 10
642 34.72 precipitation 0.1 10 < th dose dependent rect. 10 10
643 34.72 radiation 1.0 90 < th dose dependent rect. 6 23
645 34.73 humidity 70.0 14400 > th dose independent rect. 6 3
651 34.73 temperature 10.0 720 > th dose independent rect. 3 8
653 34.73 atmosphere 995.0 720 > th dose independent rect. 3 8
661 34.73 temperature 10.0 720 > th dose independent rect. 11 16
668 34.73 humidity 50.0 30 > th dose dependent rect. 23 8
669 34.74 humidity 70.0 14400 < th dose independent rect. 8 1
678 34.74 wind 9.0 10 < th dose independent rect. 10 10
679 34.74 temperature 10.0 10 > th dose independent rect. 10 10
681 34.74 atmosphere 1015.0 10 < th dose independent rect. 10 10
683 34.74 temperature 10.0 10 > th dose independent rect. 20 14
685 34.74 humidity 50.0 10 > th dose independent rect. 20 14
686 34.74 atmosphere 995.0 10 > th dose independent rect. 20 14
710 34.75 radiation 1.0 90 < th dose dependent no NA NA
714 34.75 radiation 1.0 90 < th dose dependent rect. 12 22
715 34.75 radiation 1.0 90 < th dose dependent rect. 9 23
720 34.76 humidity 70.0 14400 < th dose independent rect. 7 3
740 34.76 precipitation 0.1 30 < th dose independent rect. 20 14
745 34.76 temperature 25.0 720 > th dose dependent rect. 24 9
748 34.76 precipitation 0.1 30 < th dose dependent rect. 20 14
749 34.76 atmosphere 995.0 30 > th dose dependent rect. 23 21
759 34.77 temperature 10.0 1440 > th dose independent rect. 11 10
764 34.77 temperature 10.0 1440 > th dose independent rect. 21 14
769 34.77 atmosphere 995.0 1440 > th dose independent rect. 21 14
781 34.77 humidity 90.0 30 < th dose dependent rect. 20 14
782 34.77 humidity 90.0 4320 < th dose dependent rect. 23 14
793 34.77 radiation 1.0 90 < th dose dependent rect. 15 23
794 34.78 wind 1.0 14400 < th dose independent rect. 6 1
804 34.78 wind 9.0 720 < th dose independent rect. 3 8
811 34.78 temperature 30.0 270 < th dose independent rect. 9 12
820 34.78 atmosphere 995.0 30 > th dose dependent rect. 23 8
827 34.79 temperature 25.0 720 > th dose independent rect. 6 1
832 34.79 radiation 40.0 720 < th dose independent rect. 15 8
833 34.79 radiation 40.0 1440 < th dose independent rect. 24 8
843 34.79 humidity 90.0 30 < th dose dependent rect. 20 3
851 34.80 humidity 70.0 4320 > th dose independent rect. 10 1
854 34.80 humidity 70.0 4320 > th dose independent rect. 8 5
863 34.80 humidity 50.0 30 > th dose dependent rect. 20 3
871 34.80 humidity 50.0 4320 > th dose dependent rect. 3 10
872 34.80 humidity 90.0 4320 < th dose dependent rect. 3 10
889 34.81 humidity 70.0 4320 > th dose independent sin 5 NA
891 34.81 humidity 70.0 4320 < th dose independent rect. 10 1
920 34.81 humidity 50.0 30 > th dose independent rect. 23 21
921 34.81 humidity 90.0 4320 < th dose dependent sin 5 NA
926 34.81 temperature 25.0 90 > th dose dependent rect. 2 2
931 34.81 humidity 60.0 4320 > th dose dependent rect. 3 8
952 34.82 humidity 70.0 4320 < th dose independent rect. 8 5
960 34.82 atmosphere 995.0 720 > th dose independent rect. 15 8