Os04g0432600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0432600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.13 | 0.183 | 13.7 | 0.173 | 0.429 | 0.311 | 0.0459 | -0.589 | 0.203 | 23.3 | 34.99 | 1363 | -- | -- |
| 15.75 | 0.185 | 13.7 | 0.112 | 0.459 | 0.318 | 0.145 | -- | 0.182 | 23.3 | 93.94 | 1314 | -- | -- |
| 15.13 | 0.181 | 13.7 | 0.173 | 0.43 | 0.311 | -- | -0.594 | 0.203 | 23.3 | 33.17 | 1357 | -- | -- |
| 15.78 | 0.185 | 13.7 | 0.0935 | 0.439 | 0.29 | -- | -- | 0.176 | 23.3 | 80 | 1341 | -- | -- |
| 20.67 | 0.213 | 13.7 | 0.0596 | -- | 0.338 | -- | -0.108 | 0.104 | -- | 33.17 | 1357 | -- | -- |
| 18.58 | 0.202 | 13.8 | 0.0504 | 0.383 | -- | 0.0756 | -- | 0.103 | 23.2 | -- | -- | -- | -- |
| 18.6 | 0.202 | 13.8 | 0.0473 | 0.383 | -- | -- | -- | 0.103 | 23.3 | -- | -- | -- | -- |
| 19.25 | 0.205 | 13.7 | 0.0455 | -- | 0.294 | -- | -- | 0.111 | -- | 8.11 | 8959 | -- | -- |
| 15.99 | 0.186 | 13.7 | -- | 0.426 | 0.27 | -- | -- | 0.158 | 23.4 | 80.02 | 1361 | -- | -- |
| 27.76 | 0.246 | 13.7 | 0.0567 | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
| 18.66 | 0.202 | 13.8 | -- | 0.383 | -- | -- | -- | 0.0977 | 23.3 | -- | -- | -- | -- |
| 19.29 | 0.205 | 13.7 | -- | -- | 0.294 | -- | -- | 0.106 | -- | 7.976 | 8959 | -- | -- |
| 27.85 | 0.246 | 13.7 | -- | -- | -- | -- | -- | 0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.96 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 2 | 14.98 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 5 | 15.02 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 6 | 15.02 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 8 | 15.04 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 9 | 15.05 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 10 | 15.06 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 28 | 15.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 32 | 15.08 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 34 | 15.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 36 | 15.08 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 37 | 15.09 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 60 | 15.11 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 75 | 15.12 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 118 | 15.15 | radiation | 30 | 1440 | < th | dose dependent | sin | 0 | NA |
| 145 | 15.17 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 146 | 15.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 150 | 15.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 175 | 15.19 | radiation | 30 | 1440 | < th | dose dependent | rect. | 3 | 13 |
| 181 | 15.19 | radiation | 30 | 1440 | < th | dose dependent | rect. | 22 | 18 |
| 190 | 15.20 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 217 | 15.20 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 219 | 15.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 220 | 15.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 222 | 15.21 | radiation | 10 | 1440 | < th | dose dependent | sin | 22 | NA |
| 227 | 15.21 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 247 | 15.23 | radiation | 10 | 1440 | > th | dose independent | sin | 5 | NA |
| 312 | 15.24 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 433 | 15.26 | radiation | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 439 | 15.26 | radiation | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 453 | 15.26 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 498 | 15.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 561 | 15.28 | radiation | 1 | 1440 | > th | dose dependent | sin | 23 | NA |
| 671 | 15.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 783 | 15.32 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 784 | 15.32 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 841 | 15.33 | radiation | 20 | 1440 | < th | dose independent | sin | 1 | NA |
| 845 | 15.33 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 995 | 15.34 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |