Os04g0432500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein disulfide isomerase.
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Os04g0432500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein disulfide isomerase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.2 | 0.279 | 10.7 | 0.653 | 0.762 | 1.4 | 0.561 | 1.98 | 0.366 | 19.4 | 2.057 | 1483 | -- | -- |
| 36.56 | 0.282 | 10.7 | 0.79 | 0.737 | 1.17 | 0.559 | -- | 0.369 | 19.4 | 3.358 | 1494 | -- | -- |
| 35.92 | 0.279 | 10.7 | 0.649 | 0.754 | 1.36 | -- | 1.8 | 0.374 | 19.3 | 2.466 | 1487 | -- | -- |
| 37.32 | 0.285 | 10.7 | 0.801 | 0.784 | 1.03 | -- | -- | 0.389 | 19.7 | 3.953 | 1462 | -- | -- |
| 66.29 | 0.379 | 10.7 | 0.659 | -- | 1.53 | -- | 1.91 | 0.359 | -- | 2.382 | 1499 | -- | -- |
| 52.42 | 0.339 | 10.7 | 0.664 | 0.837 | -- | 0.691 | -- | 0.256 | 20 | -- | -- | -- | -- |
| 53.83 | 0.344 | 10.7 | 0.646 | 0.837 | -- | -- | -- | 0.257 | 19.9 | -- | -- | -- | -- |
| 68.02 | 0.384 | 10.7 | 0.806 | -- | 1.36 | -- | -- | 0.425 | -- | 3.564 | 1502 | -- | -- |
| 51.68 | 0.335 | 10.7 | -- | 0.79 | 0.781 | -- | -- | 0.34 | 19.7 | 9.14 | 1481 | -- | -- |
| 91.99 | 0.448 | 10.7 | 0.637 | -- | -- | -- | -- | 0.245 | -- | -- | -- | -- | -- |
| 64.82 | 0.377 | 10.8 | -- | 0.833 | -- | -- | -- | 0.185 | 20 | -- | -- | -- | -- |
| 83.11 | 0.425 | 10.7 | -- | -- | 0.951 | -- | -- | 0.337 | -- | 7.899 | 1512 | -- | -- |
| 102.68 | 0.473 | 10.7 | -- | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.55 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 5 | 35.25 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 6 | 35.27 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 7 | 35.28 | radiation | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 8 | 35.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 13 | 35.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 29 | 35.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 32 | 35.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 39 | 35.50 | radiation | 1 | 1440 | > th | dose independent | sin | 0 | NA |
| 40 | 35.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 61 | 35.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 81 | 35.70 | humidity | 70 | 1440 | > th | dose independent | sin | 18 | NA |
| 82 | 35.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 115 | 35.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 17 |
| 118 | 35.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 122 | 35.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 123 | 35.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 124 | 35.79 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 137 | 35.86 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 156 | 35.89 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 159 | 35.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 21 |
| 172 | 35.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 191 | 35.92 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 212 | 35.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 213 | 35.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 223 | 35.97 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 14 |
| 228 | 35.99 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 241 | 36.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 243 | 36.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 251 | 36.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 252 | 36.01 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 256 | 36.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 259 | 36.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 261 | 36.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 268 | 36.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 272 | 36.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 273 | 36.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 274 | 36.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 282 | 36.04 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 321 | 36.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 376 | 36.16 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 401 | 36.18 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 402 | 36.19 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 403 | 36.19 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 408 | 36.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 440 | 36.24 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 448 | 36.24 | humidity | 60 | 1440 | > th | dose dependent | sin | 19 | NA |
| 459 | 36.26 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 480 | 36.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 506 | 36.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 507 | 36.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 508 | 36.30 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 523 | 36.33 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 550 | 36.33 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 718 | 36.47 | humidity | 70 | 1440 | < th | dose independent | sin | 18 | NA |
| 724 | 36.48 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 749 | 36.50 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 778 | 36.52 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 825 | 36.56 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 963 | 36.61 | humidity | 60 | 1440 | > th | dose dependent | rect. | 3 | 19 |
| 1000 | 36.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 13 |