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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0432200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1605 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.87 (0.0293) R2 : 0.319
β1 : -0.972 (0.107) R2dD : 0.128 R2D : 0.129
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.38 (0.123) R2dE : 0.196 R2E : 0.176
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.103 (0.0636) R2dN8 : 0.0058 R2N8 : 0.00162
σ : 0.546
deviance : 137.26
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 66
memory length : 1179
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.11 0.515 4.87 -1.16 0.609 1.08 -0.317 1.87 0.0647 14.1 68.26 1383 -- --
124.29 0.519 4.87 -0.957 0.601 1.16 -0.279 -- 0.0996 14.1 67 1366 -- --
120.46 0.511 4.87 -1.18 0.632 1.12 -- 1.92 0.0686 14.2 70.57 1403 -- --
124.52 0.52 4.87 -0.959 0.582 1.15 -- -- 0.102 14.2 67 1343 -- --
134.66 0.54 4.87 -1.11 -- 1.33 -- 1.43 0.086 -- 66 1193 -- --
146.74 0.568 4.9 -0.959 0.691 -- -0.116 -- -0.0213 14.3 -- -- -- --
146.79 0.567 4.9 -0.962 0.691 -- -- -- -0.0219 14.3 -- -- -- --
137.26 0.546 4.87 -0.972 -- 1.38 -- -- 0.103 -- 66 1179 -- --
148.46 0.567 4.85 -- 0.572 1.13 -- -- 0.181 14.2 64.06 1332 -- --
175.11 0.618 4.9 -0.991 -- -- -- -- -0.0388 -- -- -- -- --
171.18 0.612 4.87 -- 0.709 -- -- -- 0.0852 14.3 -- -- -- --
161.54 0.592 4.86 -- -- 1.34 -- -- 0.161 -- 60.25 1170 -- --
201.02 0.662 4.88 -- -- -- -- -- 0.0712 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.94 precipitation 0.1 14400 > th dose independent rect. 17 1
2 107.80 precipitation 0.1 14400 > th dose dependent rect. 17 1
3 108.05 precipitation 0.1 14400 < th dose independent rect. 17 1
4 108.05 precipitation 0.1 14400 < th dose dependent rect. 17 1
5 110.57 humidity 80.0 1440 > th dose dependent rect. 3 11
25 111.55 humidity 70.0 1440 > th dose dependent sin 5 NA
38 111.94 humidity 80.0 1440 > th dose dependent rect. 5 4
70 112.90 wind 9.0 14400 < th dose independent rect. 5 6
85 113.35 humidity 70.0 14400 > th dose independent rect. 11 1
104 113.70 wind 3.0 43200 < th dose independent rect. 1 3
111 113.98 wind 3.0 43200 > th dose independent rect. 1 3
117 114.10 humidity 80.0 14400 > th dose independent rect. 9 1
133 114.31 humidity 80.0 1440 < th dose independent rect. 1 12
138 114.37 humidity 80.0 14400 < th dose independent rect. 9 2
157 114.61 humidity 70.0 14400 < th dose independent rect. 11 1
160 114.62 precipitation 0.1 14400 > th dose dependent rect. 5 1
161 114.63 precipitation 0.1 14400 < th dose independent rect. 15 1
162 114.63 precipitation 0.1 14400 < th dose dependent rect. 15 1
163 114.65 precipitation 0.1 14400 > th dose independent rect. 15 1
164 114.65 precipitation 0.1 14400 > th dose dependent rect. 15 1
166 114.70 precipitation 0.1 14400 < th dose independent rect. 5 1
167 114.70 precipitation 0.1 14400 < th dose dependent rect. 5 1
172 114.76 humidity 80.0 1440 > th dose independent rect. 1 12
173 114.80 humidity 80.0 1440 > th dose independent rect. 2 10
179 114.85 humidity 90.0 1440 < th dose independent rect. 5 3
187 114.93 wind 3.0 43200 < th dose independent rect. 23 8
196 115.01 wind 5.0 43200 < th dose dependent rect. 23 7
204 115.07 precipitation 0.1 14400 > th dose independent rect. 5 1
207 115.08 wind 3.0 43200 < th dose independent rect. 1 6
226 115.22 humidity 80.0 1440 < th dose independent sin 5 NA
238 115.29 wind 9.0 14400 > th dose independent rect. 6 5
247 115.34 wind 5.0 43200 < th dose dependent rect. 1 2
248 115.36 wind 3.0 43200 > th dose independent rect. 1 6
255 115.43 wind 3.0 43200 < th dose independent rect. 5 1
259 115.46 wind 3.0 43200 > th dose independent rect. 5 1
265 115.48 wind 1.0 43200 > th dose dependent rect. 5 1
266 115.50 humidity 90.0 14400 < th dose dependent rect. 14 1
271 115.55 humidity 80.0 14400 > th dose independent rect. 8 8
273 115.56 humidity 80.0 1440 > th dose independent sin 5 NA
278 115.60 humidity 50.0 14400 > th dose dependent rect. 14 1
281 115.64 humidity 90.0 1440 > th dose independent rect. 5 3
309 115.82 wind 1.0 43200 > th dose dependent rect. 23 8
344 116.12 humidity 80.0 14400 > th dose independent rect. 13 3
351 116.16 precipitation 0.1 4320 < th dose independent rect. 2 15
353 116.16 precipitation 0.1 4320 < th dose dependent rect. 2 15
356 116.19 humidity 80.0 14400 < th dose independent rect. 9 7
386 116.34 humidity 80.0 14400 > th dose dependent rect. 14 1
391 116.37 precipitation 0.1 4320 > th dose independent rect. 2 15
442 116.60 humidity 90.0 14400 > th dose dependent rect. 16 1
443 116.60 humidity 70.0 14400 > th dose dependent rect. 10 6
463 116.71 humidity 80.0 14400 > th dose dependent rect. 13 4
481 116.77 humidity 90.0 14400 > th dose independent rect. 7 1
484 116.78 wind 9.0 43200 < th dose dependent rect. 5 1
507 116.91 humidity 80.0 1440 > th dose independent rect. 11 1
542 117.05 humidity 90.0 14400 > th dose dependent rect. 7 1
565 117.11 humidity 80.0 14400 > th dose dependent rect. 7 10
589 117.20 wind 9.0 14400 < th dose independent rect. 10 1
601 117.26 humidity 70.0 14400 > th dose dependent rect. 10 1
618 117.30 humidity 80.0 14400 < th dose independent rect. 13 3
652 117.40 wind 9.0 14400 > th dose independent rect. 10 1
678 117.49 precipitation 0.1 4320 > th dose dependent rect. 2 15
698 117.53 wind 5.0 43200 < th dose dependent rect. 4 3
701 117.54 precipitation 0.1 14400 < th dose independent rect. 19 1
703 117.54 precipitation 0.1 14400 < th dose dependent rect. 19 1
727 117.61 humidity 90.0 14400 > th dose independent rect. 16 1
728 117.61 humidity 90.0 14400 < th dose independent rect. 6 3
731 117.61 humidity 70.0 1440 > th dose dependent rect. 11 1
735 117.62 wind 1.0 14400 > th dose dependent rect. 1 3
736 117.62 wind 1.0 43200 > th dose dependent rect. 4 3
738 117.63 precipitation 0.1 14400 > th dose independent rect. 19 1
757 117.71 precipitation 0.1 4320 < th dose independent rect. 5 4
758 117.71 precipitation 0.1 4320 < th dose dependent rect. 5 4
774 117.77 humidity 70.0 1440 > th dose dependent rect. 9 4
838 117.97 humidity 90.0 1440 < th dose dependent rect. 5 3
888 118.10 humidity 70.0 14400 < th dose independent rect. 18 1
907 118.14 wind 9.0 43200 < th dose dependent rect. 4 3
918 118.16 humidity 90.0 14400 > th dose dependent rect. 6 15
925 118.19 wind 1.0 4320 > th dose independent rect. 17 3
934 118.21 humidity 70.0 14400 < th dose independent rect. 18 19
953 118.24 precipitation 0.1 14400 > th dose dependent rect. 12 5