Os04g0431200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os04g0431200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.21 | 0.254 | 11.2 | -1.01 | 1.73 | -0.529 | -0.0497 | -0.766 | -0.186 | 6.14 | 24.1 | 19 | -- | -- |
| 30.15 | 0.258 | 11.2 | -1.11 | 1.73 | -0.448 | -0.112 | -- | -0.209 | 6.15 | 24.3 | 29 | -- | -- |
| 29.18 | 0.254 | 11.2 | -1.01 | 1.73 | -0.526 | -- | -0.771 | -0.186 | 6.13 | 24.1 | 19 | -- | -- |
| 30.18 | 0.258 | 11.2 | -1.11 | 1.73 | -0.448 | -- | -- | -0.209 | 6.15 | 24.38 | 22 | -- | -- |
| 183.8 | 0.635 | 11.2 | -0.943 | -- | -0.357 | -- | -0.643 | -0.121 | -- | 23.6 | 8 | -- | -- |
| 33.06 | 0.27 | 11.2 | -1 | 1.72 | -- | -0.122 | -- | -0.132 | 6.33 | -- | -- | -- | -- |
| 33.1 | 0.269 | 11.2 | -1 | 1.71 | -- | -- | -- | -0.131 | 6.33 | -- | -- | -- | -- |
| 184.47 | 0.635 | 11.2 | -1.02 | -- | -0.286 | -- | -- | -0.138 | -- | 23.8 | 4 | -- | -- |
| 59.34 | 0.359 | 11.2 | -- | 1.66 | 0.16 | -- | -- | 0.00557 | 6.42 | 30.7 | 219 | -- | -- |
| 185.74 | 0.637 | 11.2 | -0.959 | -- | -- | -- | -- | -0.0945 | -- | -- | -- | -- | -- |
| 59.7 | 0.361 | 11.2 | -- | 1.7 | -- | -- | -- | -0.0195 | 6.36 | -- | -- | -- | -- |
| 169.05 | 0.606 | 11.2 | -- | -- | 1.59 | -- | -- | 0.196 | -- | 54.67 | 384 | -- | -- |
| 210.01 | 0.676 | 11.2 | -- | -- | -- | -- | -- | 0.0119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 4 | 27.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 10 | 27.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 14 | 27.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 25 | 28.11 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 4 |
| 26 | 28.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 57 | 28.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 72 | 28.38 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 77 | 28.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 94 | 28.47 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 103 | 28.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 113 | 28.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 123 | 28.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 214 | 28.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 22 |
| 219 | 28.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 243 | 28.93 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 272 | 28.99 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 7 |
| 285 | 29.01 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 288 | 29.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 310 | 29.06 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 313 | 29.06 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 22 |
| 321 | 29.07 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 334 | 29.09 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 348 | 29.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 19 |
| 349 | 29.12 | humidity | 50 | 4320 | > th | dose independent | rect. | 10 | 7 |
| 352 | 29.12 | humidity | 50 | 4320 | > th | dose independent | rect. | 7 | 10 |
| 354 | 29.12 | humidity | 50 | 4320 | > th | dose independent | rect. | 24 | 17 |
| 356 | 29.12 | humidity | 50 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 366 | 29.13 | humidity | 50 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 369 | 29.13 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 20 |
| 396 | 29.15 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 417 | 29.17 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 429 | 29.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 434 | 29.18 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 462 | 29.19 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 22 |
| 517 | 29.22 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 19 |
| 521 | 29.23 | wind | 3 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 555 | 29.24 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 22 |
| 582 | 29.26 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 605 | 29.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 683 | 29.33 | humidity | 50 | 4320 | < th | dose independent | rect. | 11 | 6 |
| 732 | 29.35 | humidity | 50 | 4320 | > th | dose independent | sin | 0 | NA |
| 787 | 29.36 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 818 | 29.38 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 832 | 29.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 836 | 29.39 | humidity | 50 | 4320 | > th | dose independent | rect. | 6 | 14 |
| 840 | 29.39 | humidity | 50 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 841 | 29.39 | humidity | 50 | 4320 | > th | dose independent | rect. | 23 | 22 |
| 856 | 29.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 857 | 29.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 859 | 29.40 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 862 | 29.40 | humidity | 50 | 4320 | > th | dose independent | rect. | 10 | 10 |
| 874 | 29.40 | humidity | 50 | 4320 | > th | dose independent | rect. | 10 | 17 |
| 875 | 29.40 | humidity | 50 | 4320 | > th | dose independent | rect. | 2 | 18 |
| 877 | 29.40 | humidity | 50 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 900 | 29.40 | humidity | 50 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 902 | 29.40 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 907 | 29.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 925 | 29.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 926 | 29.41 | humidity | 50 | 4320 | > th | dose independent | no | NA | NA |