Os04g0431100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GrpE protein homolog.
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Os04g0431100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GrpE protein homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.96 | 0.282 | 12.5 | -0.117 | 0.397 | -0.0581 | 0.339 | -3.94 | -0.605 | 9.71 | 29.55 | 892 | -- | -- |
| 37.32 | 0.285 | 12.6 | -0.749 | 0.334 | -0.412 | 0.0294 | -- | -0.726 | 9.44 | 29.5 | 1633 | -- | -- |
| 36.35 | 0.281 | 12.5 | -0.161 | 0.396 | -0.0854 | -- | -3.56 | -0.616 | 9.58 | 29.5 | 894 | -- | -- |
| 37.27 | 0.284 | 12.6 | -0.755 | 0.337 | -0.427 | -- | -- | -0.741 | 9.47 | 29.41 | 1640 | -- | -- |
| 44.84 | 0.312 | 12.5 | -0.161 | -- | -0.0854 | -- | -3.56 | -0.616 | -- | 29.5 | 3784 | -- | -- |
| 44.64 | 0.313 | 12.6 | -0.632 | 0.316 | -- | -0.0185 | -- | -0.721 | 9.6 | -- | -- | -- | -- |
| 44.64 | 0.313 | 12.6 | -0.632 | 0.316 | -- | -- | -- | -0.721 | 9.61 | -- | -- | -- | -- |
| 43.85 | 0.308 | 12.6 | -0.753 | -- | -0.393 | -- | -- | -0.742 | -- | 29.43 | 1559 | -- | -- |
| 51.61 | 0.335 | 12.6 | -- | 0.331 | -0.29 | -- | -- | -0.671 | 9.63 | 29.3 | 1631 | -- | -- |
| 50.54 | 0.332 | 12.6 | -0.635 | -- | -- | -- | -- | -0.721 | -- | -- | -- | -- | -- |
| 55.18 | 0.347 | 12.6 | -- | 0.317 | -- | -- | -- | -0.651 | 9.76 | -- | -- | -- | -- |
| 57.61 | 0.355 | 12.6 | -- | -- | -0.245 | -- | -- | -0.66 | -- | 29.2 | 1557 | -- | -- |
| 61.17 | 0.365 | 12.6 | -- | -- | -- | -- | -- | -0.65 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 7 | 35.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 18 |
| 11 | 35.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 12 | 35.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 13 | 35.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 16 |
| 18 | 35.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 19 | 35.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 39 | 35.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 10 |
| 42 | 35.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 13 |
| 50 | 35.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 51 | 35.35 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 9 |
| 65 | 35.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 17 |
| 67 | 35.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 68 | 35.36 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 18 | NA |
| 101 | 35.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 105 | 35.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 110 | 35.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 15 |
| 185 | 35.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 13 |
| 188 | 35.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 197 | 35.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 206 | 35.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 14 |
| 232 | 35.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 259 | 35.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 265 | 35.58 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 19 | NA |
| 272 | 35.58 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 279 | 35.59 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 19 | NA |
| 309 | 35.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 20 |
| 319 | 35.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 328 | 35.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 344 | 35.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 352 | 35.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 354 | 35.65 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 359 | 35.65 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 377 | 35.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 386 | 35.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 391 | 35.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 435 | 35.72 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 445 | 35.73 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 446 | 35.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 492 | 35.75 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 515 | 35.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 575 | 35.82 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 582 | 35.83 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 599 | 35.85 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 663 | 35.94 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 679 | 35.98 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 717 | 36.10 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 720 | 36.10 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 728 | 36.11 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 734 | 36.12 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 744 | 36.14 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 761 | 36.16 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 762 | 36.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 792 | 36.23 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 821 | 36.24 | temperature | 30.0 | 720 | > th | dose independent | rect. | 12 | 3 |
| 824 | 36.24 | temperature | 30.0 | 720 | < th | dose independent | rect. | 8 | 14 |
| 828 | 36.25 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 851 | 36.27 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 857 | 36.27 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 9 |
| 874 | 36.27 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 880 | 36.28 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 938 | 36.32 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 956 | 36.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 22 |
| 957 | 36.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 960 | 36.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 22 |
| 961 | 36.36 | temperature | 30.0 | 720 | > th | dose independent | sin | 2 | NA |
| 962 | 36.36 | humidity | 60.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 965 | 36.36 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 12 |
| 976 | 36.37 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |